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nsp2

Euk-Vir

Betacoronavirus_England_1

nsp2__YP_009944282__Betacoronavirus_England_1__1263720

Identity

Accession:
YP_009944282 ↗
Protein ID:
nsp2
Kingdom:
euk

Quality

71.4 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Nidovirales› Coronaviridae› Betacoronavirus› Betacoronavirus_England_1

TaxID: 1263720

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-82
PDB
Domain cluster: rep: nsp2__YP_009924384__Rousettus_bat_coronavirus_HKU9__694006__D2-83
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19211.6 best CoV_NSP2_N 65.8 5.20e-18 100.0% 32.3%
D2 high residues 98-286
PDB
Domain cluster: rep: nsp2__YP_009915689__Murine_hepatitis_virus__11138__D110-226_244-292
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19211.6 best CoV_NSP2_N 86.1 3.10e-24 81.0% 61.2%
D3 high residues 546-658
PDB
Domain cluster: rep: p87__NP_835357__Human_coronavirus_229E__11137__D681-785
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19212.6 best CoV_NSP2_C 66.4 3.70e-18 99.1% 87.5%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.52 31.0 3.63e-01 84.1% 85.7%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.52 26.0 3.39e-01 79.6% 96.3%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2526296 4.32.1.1 ↗ beta barrels › SH3 › Replicase polyprotein 1a N-terminal beta barrel domain › Replicase polyprotein 1a N-terminal beta barrel domain › NSP2_gammaCoV 0.81 65.0 6.47e-01 100.0% 82.6%
1513168 809.1.1.4 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › DUF4309 0.57 34.0 4.14e-01 99.1% 100.0%
3388697 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.55 34.0 3.86e-01 86.7% 85.0%
1171964 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.55 29.0 3.70e-01 84.1% 96.6%
1140832 809.2.1.1 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.54 29.0 3.67e-01 85.0% 95.0%
D4 medium residues 290-304_324-371
PDB
D5 medium residues 440-545
PDB
Domain cluster: rep: nsp2__YP_009944293__Betacoronavirus_England_1__1263720__D440-545