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nsp2
Euk-VirBetacoronavirus_England_1
nsp2__YP_009944293__Betacoronavirus_England_1__1263720
Identity
- Accession:
- YP_009944293 ↗
- Protein ID:
- nsp2
- Kingdom:
- euk
Quality
71.4
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Nidovirales›
Coronaviridae›
Betacoronavirus›
Betacoronavirus_England_1
TaxID: 1263720
Cluster
View cluster (10 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-82
Domain cluster:
rep: nsp2__YP_009924384__Rousettus_bat_coronavirus_HKU9__694006__D2-83
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19211.6 best | CoV_NSP2_N | 65.8 | 5.20e-18 | 100.0% | 32.3% |
D2
high
residues 98-286
Domain cluster:
rep: nsp2__YP_009915689__Murine_hepatitis_virus__11138__D110-226_244-292
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19211.6 best | CoV_NSP2_N | 86.1 | 3.10e-24 | 81.0% | 61.2% |
D3
high
residues 546-658
Domain cluster:
rep: p87__NP_835357__Human_coronavirus_229E__11137__D681-785
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19212.6 best | CoV_NSP2_C | 66.4 | 3.70e-18 | 99.1% | 87.5% |
D4
medium
residues 290-304_324-371
D5
medium
residues 440-545
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ka8A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 29.0 | 3.01e-01 | 84.9% | 54.0% |
| 2v6eA04 | 1.10.10.2040 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.50 | 39.0 | 4.15e-01 | 92.5% | 95.7% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3385738 | 878.1.1.0 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 | 0.60 | 33.0 | 4.04e-01 | 84.9% | 86.2% |
| 3928506 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.59 | 34.0 | 3.71e-01 | 100.0% | 69.4% |
| 3670822 | 601.18.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 | 0.56 | 36.0 | 4.07e-01 | 77.4% | 86.3% |
| 3587982 | 4125.1.1.3 ↗ | alpha superhelices › BH3980-like › BH3980-like › BH3980-like › DUF1129 | 0.52 | 32.0 | 3.57e-01 | 71.7% | 84.0% |
| 4518850 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 41.0 | 2.74e-01 | 85.8% | 38.1% |
| 3383010 | 4.1.1.299 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW, KOW1_SPT5 | 0.50 | 29.0 | 2.73e-01 | 94.3% | 44.6% |