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nsp2

Euk-Vir

Tylonycteris_bat_coronavirus_HKU4

nsp2__YP_009944311__Tylonycteris_bat_coronavirus_HKU4__694007

Identity

Accession:: YP_009944311 ↗
Protein ID:: nsp2
Kingdom:: euk

Quality

55.8 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Nidovirales› Coronaviridae› Betacoronavirus› Tylonycteris_bat_coronavirus_HKU4

TaxID: 694007

Cluster

View cluster (10 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-101

PDB

Domain cluster: rep: nsp2__YP_009924384__Rousettus_bat_coronavirus_HKU9__694006__D2-83

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF19211.6 best	CoV_NSP2_N	80.6	1.50e-22	100.0%	36.8%

D2 high residues 483-548

PDB

D3 high residues 585-649

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF19212.6 best	CoV_NSP2_C	65.2	9.20e-18	100.0%	52.5%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3nkdA01	3.100.10.20	Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain	0.66	38.0	3.50e-01	87.7%	44.0%
3zfnA02	2.30.140.40	Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain	0.64	49.0	5.17e-01	81.5%	96.5%
1nr0A02	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.61	46.0	2.93e-01	81.5%	96.5%
7razA01	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.58	37.0	3.36e-01	75.4%	49.4%
4hwmA00	2.40.128.500	Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein	0.55	46.0	3.82e-01	93.8%	60.7%
2jxbA00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.52	36.0	3.42e-01	75.4%	87.2%
2k6hA01	3.40.420.10	Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1	0.52	43.0	3.25e-01	95.4%	97.6%
2qqrA02	3.10.330.70	Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 ›	0.51	34.0	3.67e-01	86.2%	83.0%
4maaA02	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.51	37.0	2.75e-01	78.5%	83.5%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3605532	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.60	44.0	2.83e-01	81.5%	95.4%
3717630	2002.1.1.0 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels	0.60	46.0	2.91e-01	84.6%	75.5%
3436240	5.1.4.550 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95	0.57	43.0	2.77e-01	81.5%	87.1%
154175	6.1.1.11 ↗	beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin	0.55	43.0	3.52e-01	89.2%	91.5%
3641403	5.1.3.65 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295	0.54	37.0	2.53e-01	98.5%	18.5%
3684135	5.1.3.67 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1	0.54	44.0	2.77e-01	90.8%	38.2%
3929846	5.1.3.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed	0.53	43.0	2.82e-01	92.3%	42.2%
3335404	4.1.1.350 ↗	beta barrels › SH3 › SH3 › SH3 › DUF7589	0.53	40.0	3.23e-01	83.1%	80.7%
3924096	5.1.4.102 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_3	0.52	42.0	2.75e-01	92.3%	38.7%
3974596	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.51	39.0	4.15e-01	100.0%	98.2%
4346433	2003.1.10.2 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N	0.51	41.0	3.32e-01	89.2%	50.8%
3709573	5.1.4.302 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EML	0.51	42.0	2.75e-01	93.8%	38.1%
3777739	5.1.4.1 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40	0.50	42.0	2.61e-01	93.8%	21.3%
3606702	5.1.4.1 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40	0.50	41.0	2.68e-01	93.8%	36.9%

D4 medium residues 102-283

PDB

D5 medium residues 296-476

PDB