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nsp2
Euk-VirPipistrellus_bat_coronavirus_HKU5
nsp2__YP_009944355__Pipistrellus_bat_coronavirus_HKU5__694008
Identity
- Accession:
- YP_009944355 ↗
- Protein ID:
- nsp2
- Kingdom:
- euk
Quality
59.9
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Nidovirales›
Coronaviridae›
Betacoronavirus›
Pipistrellus_bat_coronavirus_HKU5
TaxID: 694008
Cluster
View cluster (10 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-82
Domain cluster:
rep: nsp2__YP_009924384__Rousettus_bat_coronavirus_HKU9__694006__D2-83
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19211.6 best | CoV_NSP2_N | 56.8 | 3.00e-15 | 100.0% | 32.3% |
D2
high
residues 98-267
Domain cluster:
rep: nsp2__YP_009915689__Murine_hepatitis_virus__11138__D110-226_244-292
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19211.6 best | CoV_NSP2_N | 97.3 | 1.20e-27 | 87.6% | 60.2% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fgtA01 | 2.10.70.60 | Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 | 0.71 | 23.0 | 4.04e-01 | 78.2% | 89.1% |
| 4bwcA01 | 2.10.70.60 | Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 | 0.65 | 21.0 | 3.69e-01 | 77.6% | 90.6% |
| 2joiA00 | 3.30.310.190 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.63 | 29.0 | 3.76e-01 | 85.3% | 76.0% |
| 2xzlA02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.61 | 23.0 | 3.39e-01 | 85.3% | 74.7% |
| 2e1qC01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.54 | 21.0 | 2.84e-01 | 92.4% | 65.2% |
| 4yo1A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 25.0 | 3.42e-01 | 74.7% | 85.4% |
| 2jpiA00 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.52 | 24.0 | 3.05e-01 | 97.1% | 71.9% |
| 6heiA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 42.0 | 3.41e-01 | 87.6% | 90.1% |
| 2nv4A00 | 2.40.30.70 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like | 0.51 | 33.0 | 3.68e-01 | 89.4% | 82.6% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4013625 | 3417.1.1.0 ↗ | a+b three layers › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain | 0.65 | 22.0 | 3.72e-01 | 70.0% | 88.1% |
| 4958012 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.63 | 25.0 | 3.60e-01 | 94.1% | 78.7% |
| 3388732 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.63 | 30.0 | 4.09e-01 | 96.5% | 89.4% |
| 3931413 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.62 | 28.0 | 3.92e-01 | 97.6% | 87.5% |
| 5053646 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.62 | 29.0 | 3.98e-01 | 96.5% | 88.2% |
| 3732152 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.61 | 27.0 | 3.81e-01 | 95.9% | 86.3% |
| 4941285 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.59 | 23.0 | 3.37e-01 | 85.9% | 80.0% |
| 5061645 | 4312.1.1.15 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 | 0.59 | 24.0 | 3.79e-01 | 79.4% | 98.4% |
| 5060936 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.59 | 27.0 | 3.58e-01 | 85.9% | 78.9% |
| 5035567 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.55 | 25.0 | 3.57e-01 | 90.0% | 100.0% |
| 4318152 | 221.1.1.99 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UCH | 0.53 | 44.0 | 3.21e-01 | 89.4% | 68.6% |
| 3971924 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.52 | 25.0 | 3.41e-01 | 83.5% | 90.5% |
| 3495040 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.52 | 43.0 | 3.24e-01 | 90.0% | 66.8% |
| 3544248 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.52 | 42.0 | 3.12e-01 | 87.1% | 66.5% |
| 184669 | 331.2.1.2 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › DUF2218 | 0.52 | 24.0 | 3.05e-01 | 97.1% | 71.9% |
| 185643 | 223.2.1.11 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › AP3D1,Longin | 0.51 | 24.0 | 2.58e-01 | 91.2% | 46.5% |
| 3973141 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.51 | 26.0 | 3.25e-01 | 97.1% | 85.6% |
| 3411408 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.50 | 41.0 | 3.02e-01 | 88.2% | 69.3% |
| 5000881 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 31.0 | 3.32e-01 | 82.9% | 67.7% |
D3
medium
residues 486-574
D4
medium
residues 575-593_610-656