nsp2

Euk-Vir

SARS_coronavirus_Tor2

nsp2__YP_009944367__SARS_coronavirus_Tor2__227984

Identity

65.5 mean pLDDT

Orthornavirae› Pisuviricota› Pisoniviricetes› Nidovirales› Coronaviridae› Betacoronavirus› SARS_coronavirus_Tor2

TaxID: 227984

View cluster (4 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 124-263

PDB

D2 high residues 274-375

PDB

D3 high residues 416-511

PDB

D4 high residues 537-636

PDB

Domain cluster: rep: p87__NP_835357__Human_coronavirus_229E__11137__D681-785

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4akrA01	3.30.1140.60	Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit	0.59	36.0	3.61e-01	96.0%	58.5%
2r6zA01	3.40.1630.10	Alpha Beta › 3-Layer(aba) Sandwich › S-adenosyl-L-methionine-dependent methyltransferases › YhiQ-like domain	0.51	27.0	3.53e-01	73.0%	96.3%
2jo6A00	2.102.10.10	Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain	0.51	36.0	3.49e-01	88.0%	66.4%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2526296	4.32.1.1 ↗	beta barrels › SH3 › Replicase polyprotein 1a N-terminal beta barrel domain › Replicase polyprotein 1a N-terminal beta barrel domain › NSP2_gammaCoV	0.71	61.0	5.85e-01	100.0%	81.7%
3627280	331.23.1.0 ↗	a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain	0.53	29.0	3.24e-01	99.0%	69.3%

D5 medium residues 1-123

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF19211.6 best	CoV_NSP2_N	36.3	5.60e-09	99.2%	49.8%