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nsp4
Euk-VirRabbit_coronavirus_HKU14
nsp4__YP_009924412__Rabbit_coronavirus_HKU14__1160968
Identity
- Accession:
- YP_009924412 ↗
- Protein ID:
- nsp4
- Kingdom:
- euk
Quality
80.7
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Nidovirales›
Coronaviridae›
Betacoronavirus›
Rabbit_coronavirus_HKU14
TaxID: 1160968
Cluster
View cluster (24 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 42-124
Domain cluster:
rep: nsp4__YP_009924386__Rousettus_bat_coronavirus_HKU9__694006__D42-118
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19217.6 best | CoV_NSP4_N | 76.8 | 3.20e-21 | 100.0% | 22.2% |
D2
high
residues 276-400
Domain cluster:
rep: nsp4__YP_009924386__Rousettus_bat_coronavirus_HKU9__694006__D276-394
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19217.6 best | CoV_NSP4_N | 83.5 | 2.90e-23 | 82.4% | 28.4% |
D3
high
residues 409-483
Domain cluster:
rep: nsp4_-TM2-__YP_009944272__Human_coronavirus_HKU1__290028__D409-483
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16348.11 best | CoV_NSP4_C | 108.3 | 4.00e-31 | 100.0% | 77.1% |
D4
medium
residues 127-195
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19217.6 best | CoV_NSP4_N | 65.1 | 1.10e-17 | 100.0% | 18.2% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4k6nA02 | 3.20.10.10 | Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 | 0.57 | 46.0 | 3.68e-01 | 92.8% | 86.3% |
| 4gi3C00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.56 | 34.0 | 3.71e-01 | 87.0% | 73.7% |
| 2i1sA00 | 3.10.290.30 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › MM3350-like | 0.54 | 45.0 | 3.34e-01 | 91.3% | 42.7% |
| 2bvfA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.54 | 47.0 | 3.71e-01 | 97.1% | 68.1% |
| 1zr6A02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.54 | 46.0 | 3.69e-01 | 97.1% | 68.8% |
| 1e0yA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.53 | 46.0 | 3.94e-01 | 97.1% | 84.7% |
| 2abjD02 | 3.20.10.10 | Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 | 0.53 | 43.0 | 3.32e-01 | 94.2% | 89.1% |
| 6jifA02 | 3.20.10.10 | Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 | 0.53 | 43.0 | 3.27e-01 | 92.8% | 85.5% |
| 2vfrA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.52 | 45.0 | 3.69e-01 | 98.6% | 73.1% |
| 3loiA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 43.0 | 3.45e-01 | 100.0% | 98.8% |
| 2yvsA01 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.52 | 43.0 | 3.76e-01 | 97.1% | 90.4% |
| 1hskA01 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.51 | 44.0 | 3.65e-01 | 97.1% | 71.7% |
| 4pytA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.50 | 43.0 | 3.56e-01 | 97.1% | 72.7% |
| 1yudA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 41.0 | 3.36e-01 | 100.0% | 99.4% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5083849 | 4027.1.1.2 ↗ | beta barrels › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit › TOP6A-Spo11_Toprim | 0.60 | 37.0 | 4.24e-01 | 87.0% | 86.0% |
| 3959696 | 217.1.1.0 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain | 0.54 | 47.0 | 3.66e-01 | 98.6% | 64.5% |
| 3661045 | 217.1.1.2 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 | 0.54 | 47.0 | 3.86e-01 | 98.6% | 76.2% |
| 1114849 | 217.1.1.2 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 | 0.54 | 47.0 | 3.86e-01 | 98.6% | 78.9% |
| 4971152 | 217.1.1.2 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 | 0.54 | 45.0 | 3.21e-01 | 97.1% | 48.3% |
| 4158834 | 217.1.1.2 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 | 0.50 | 43.0 | 3.16e-01 | 97.1% | 47.7% |
D5
medium
residues 196-271
Domain cluster:
rep: NSP4__YP_001941177__Turkey_coronavirus__11152__D222-291
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19217.6 best | CoV_NSP4_N | 92.6 | 4.80e-26 | 100.0% | 21.0% |