nsp4_nonstructural_protein_-putative_start-_putative

Euk-Vir

Sindbis_virus

nsp4_nonstructural_protein_-putative_start-_putative__NP_740669__Sindbis_virus__11034

Identity

78.7 mean pLDDT

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Togaviridae› Alphavirus› Sindbis_virus

TaxID: 11034

View cluster (32 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 39-97

PDB

Domain cluster: rep: RNA-directed_RNA_polymerase_nsp4__YP_009020586__Madariaga_virus__1440170__D35-90

D2 medium residues 116-152_527-606

PDB

Domain cluster: rep: replication_protein_2a__YP_006576519__Amazon_lily_mild_mottle_virus__1195163__D529-657

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	48.3	1.00e-12	84.6%	19.8%

D3 medium residues 224-270_321-346_385-412_430-445

PDB

Domain cluster: rep: ORF_1b__YP_003289291__Strawberry_pallidosis-associated_virus__227507__D117-174_213-235_276-309

D4 medium residues 271-320_413-429

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	34.9	1.20e-08	94.0%	10.2%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5l77A01	2.60.40.1180	Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II	0.64	46.0	3.69e-01	76.1%	91.7%
2yc3A00	3.90.550.10	Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	0.56	44.0	3.15e-01	89.6%	77.2%
1asuA00	3.30.420.10	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H	0.53	37.0	2.88e-01	74.6%	54.9%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3592215	64.1.1.0 ↗	beta meanders › WW domain-like › WW domain › WW domain	0.51	36.0	3.93e-01	74.6%	94.3%

D5 medium residues 347-384_446-526

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009345057__Xinzhou_nematode_virus_7__1923775__D238-258_337-401

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	70.1	2.50e-19	68.1%	15.9%