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nsp6
Euk-VirCanada_goose_coronavirus
nsp6__YP_009755915__Canada_goose_coronavirus__2569586
Identity
- Accession:
- YP_009755915 ↗
- Protein ID:
- nsp6
- Kingdom:
- euk
Quality
74.0
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Nidovirales›
Coronaviridae›
Gammacoronavirus›
Canada_goose_coronavirus
TaxID: 2569586
Cluster
View cluster (35 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 238-294
Domain cluster:
rep: nsp6__YP_009924414__Rabbit_coronavirus_HKU14__1160968__D233-286
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19213.6 best | CoV_NSP6 | 63.3 | 6.10e-17 | 100.0% | 21.3% |
D2
medium
residues 1-74
Domain cluster:
rep: NSP6__YP_009825034__Duck_coronavirus__300188__D1-57
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19213.6 best | CoV_NSP6 | 27.3 | 5.80e-06 | 74.3% | 17.5% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4an8A02 | 1.10.132.100 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.71 | 52.0 | 4.44e-01 | 78.4% | 50.0% |
| 1bi0A02 | 1.10.60.10 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain | 0.70 | 45.0 | 4.76e-01 | 81.1% | 74.2% |
| 2bg1A01 | 3.90.1310.40 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › | 0.68 | 56.0 | 5.59e-01 | 90.5% | 96.1% |
| 5u4nA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.67 | 49.0 | 3.16e-01 | 78.4% | 52.3% |
| 4ye6A01 | 1.10.8.1290 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1 | 0.67 | 43.0 | 3.86e-01 | 82.4% | 47.1% |
| 1wp7A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.66 | 43.0 | 4.65e-01 | 71.6% | 78.1% |
| 1u61A00 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.65 | 50.0 | 4.26e-01 | 85.1% | 87.4% |
| 1gvfB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.65 | 48.0 | 3.27e-01 | 79.7% | 38.9% |
| 3fixA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.64 | 51.0 | 3.96e-01 | 87.8% | 54.5% |
| 8d7hD01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.63 | 44.0 | 3.37e-01 | 73.0% | 35.3% |
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.62 | 50.0 | 4.82e-01 | 90.5% | 78.8% |
| 4zqeA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.61 | 48.0 | 4.45e-01 | 86.5% | 74.0% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.60 | 43.0 | 4.13e-01 | 77.0% | 98.9% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.59 | 41.0 | 4.07e-01 | 71.6% | 71.4% |
| 3sqnA03 | 1.10.1790.30 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › | 0.56 | 42.0 | 3.64e-01 | 81.1% | 68.6% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 38.0 | 4.04e-01 | 73.0% | 81.5% |
| 4nqwA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.56 | 41.0 | 4.04e-01 | 82.4% | 81.0% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.53 | 45.0 | 3.57e-01 | 94.6% | 47.4% |
| 1s3qG00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 41.0 | 3.25e-01 | 87.8% | 50.3% |
| 1zs3A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 45.0 | 3.47e-01 | 100.0% | 82.5% |
| 3hhcC00 | 1.20.1250.60 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interferon lambda | 0.51 | 42.0 | 3.40e-01 | 94.6% | 46.4% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.50 | 35.0 | 3.53e-01 | 73.0% | 74.7% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3963947 | 3826.1.1.25 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › GlutR_dimer | 0.73 | 50.0 | 4.90e-01 | 73.0% | 66.3% |
| 4063563 | 142.1.1.5 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SRI | 0.70 | 57.0 | 5.26e-01 | 90.5% | 76.8% |
| 4540208 | 3921.1.1.1 ↗ | alpha complex topology › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Rnf-Nqr | 0.69 | 62.0 | 4.41e-01 | 97.3% | 46.7% |
| 5063852 | 3921.1.1.1 ↗ | alpha complex topology › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Rnf-Nqr | 0.69 | 62.0 | 4.45e-01 | 97.3% | 49.5% |
| 2897149 | 3921.1.1.1 ↗ | alpha complex topology › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Rnf-Nqr | 0.68 | 61.0 | 4.35e-01 | 97.3% | 47.6% |
| 3067223 | 3921.1.1.1 ↗ | alpha complex topology › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Rnf-Nqr | 0.68 | 59.0 | 4.23e-01 | 95.9% | 46.0% |
| 5012157 | 605.1.1.354 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › MS_channel_1st_1 | 0.67 | 46.0 | 4.50e-01 | 73.0% | 90.6% |
| 3643105 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.66 | 53.0 | 4.18e-01 | 87.8% | 52.3% |
| 3668287 | 601.2.1.5 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Ctr | 0.66 | 48.0 | 4.25e-01 | 78.4% | 63.6% |
| 5058468 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.66 | 47.0 | 4.73e-01 | 77.0% | 74.7% |
| 3597348 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.65 | 51.0 | 3.41e-01 | 87.8% | 34.8% |
| 4093115 | 3877.1.1.1 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP | 0.64 | 54.0 | 3.81e-01 | 94.6% | 32.1% |
| 3972034 | 3615.1.1.0 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain | 0.63 | 54.0 | 4.72e-01 | 100.0% | 80.8% |
| 4472146 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.62 | 50.0 | 4.60e-01 | 91.9% | 86.0% |
| 3229576 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.62 | 53.0 | 5.17e-01 | 93.2% | 90.0% |
| 4523828 | 101.26.1.2 ↗ | alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › HTH_44 | 0.61 | 44.0 | 3.61e-01 | 77.0% | 71.4% |
| 4016130 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.61 | 50.0 | 5.07e-01 | 93.2% | 93.3% |
| 4085263 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.60 | 52.0 | 4.81e-01 | 100.0% | 89.0% |
| 3588508 | 162.1.1.0 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD | 0.60 | 46.0 | 4.23e-01 | 85.1% | 82.0% |
| 3232756 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.54 | 37.0 | 3.61e-01 | 70.3% | 64.7% |
| 4017917 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.53 | 44.0 | 3.49e-01 | 100.0% | 49.7% |