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nsp6
Euk-VirMurine_hepatitis_virus
nsp6__YP_009924336__Murine_hepatitis_virus__11138
Identity
- Accession:
- YP_009924336 ↗
- Protein ID:
- nsp6
- Kingdom:
- euk
Quality
75.8
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Nidovirales›
Coronaviridae›
Betacoronavirus›
Murine_hepatitis_virus
TaxID: 11138
Cluster
View cluster (35 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 60-224
Domain cluster:
rep: nsp6__NP_828864__SARS_coronavirus_Tor2__227984__D65-231
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19213.6 best | CoV_NSP6 | 111.8 | 9.70e-32 | 100.0% | 63.5% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4okmD00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.58 | 45.0 | 3.66e-01 | 81.2% | 87.7% |
| 7dl9B02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.55 | 41.0 | 3.82e-01 | 98.8% | 62.1% |
| 4ezbA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.55 | 27.0 | 3.10e-01 | 97.6% | 62.4% |
| 3emlA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.54 | 41.0 | 3.41e-01 | 79.4% | 88.5% |
| 3lk5A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 46.0 | 3.73e-01 | 100.0% | 94.9% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3587432 | 3457.1.1.0 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease | 0.66 | 54.0 | 5.22e-01 | 100.0% | 77.0% |
| 3253319 | 5073.1.1.11 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Cation_ATPase_C | 0.61 | 51.0 | 3.85e-01 | 90.3% | 80.5% |
D2
high
residues 234-286
Domain cluster:
rep: nsp6__YP_009924414__Rabbit_coronavirus_HKU14__1160968__D233-286
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19213.6 best | CoV_NSP6 | 92.5 | 7.80e-26 | 100.0% | 20.2% |
D3
medium
residues 1-59
Domain cluster:
rep: nsp6__YP_009555258__Human_coronavirus_OC43__31631__D1-60