nsp6

Euk-Vir

Rabbit_coronavirus_HKU14

nsp6__YP_009924414__Rabbit_coronavirus_HKU14__1160968

Identity

74.6 mean pLDDT

Orthornavirae› Pisuviricota› Pisoniviricetes› Nidovirales› Coronaviridae› Betacoronavirus› Rabbit_coronavirus_HKU14

TaxID: 1160968

View cluster (35 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 233-286

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF19213.6 best	CoV_NSP6	93.5	3.70e-26	100.0%	20.5%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3clhA02	1.20.1090.10	Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain	0.57	44.0	3.40e-01	94.4%	76.5%
2qvwB05	1.10.1740.150	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A ›	0.54	39.0	3.54e-01	75.9%	78.9%
2abkA02	1.10.1670.10	Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal)	0.51	43.0	3.50e-01	92.6%	71.7%
1aowA02	1.10.220.10	Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin	0.51	34.0	3.22e-01	72.2%	77.0%
2mgqA00	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.51	36.0	3.39e-01	75.9%	85.3%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4956607	101.21.1.1 ↗	alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N	0.58	42.0	3.32e-01	77.8%	98.3%
5004099	210.1.3.4 ↗	a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6	0.58	47.0	3.22e-01	92.6%	90.2%
4933514	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.54	38.0	2.95e-01	77.8%	92.9%