←Back to structures

nuclear_antigen_EBNA-3A

Euk-Vir

Human_gammaherpesvirus_4

nuclear_antigen_EBNA-3A__YP_401669__Human_gammaherpesvirus_4__10376

Identity

Accession:: YP_401669 ↗
Protein ID:: nuclear_antigen_EBNA-3A
Kingdom:: euk

Quality

42.2 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Lymphocryptovirus› human_gammaherpesvirus_4

TaxID: 10376

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 222-335

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05009.18 best	EBV-NA3	169.8	1.20e-49	100.0%	47.2%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4uiqB00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.61	44.0	4.02e-01	76.3%	83.0%
3lk5A00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.60	45.0	3.23e-01	78.1%	45.6%
1zylA02	1.10.510.10	Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1	0.60	53.0	5.07e-01	99.1%	100.0%
2rg8A00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.59	45.0	4.13e-01	81.6%	72.0%
3ggyA00	1.20.1260.60	Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1	0.59	49.0	4.24e-01	93.0%	82.8%
1ashA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.57	44.0	4.11e-01	83.3%	88.4%
1td6A03	1.10.472.40	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Hypothetical protein mg237 homolog; domain 3	0.54	33.0	3.65e-01	100.0%	76.1%
1yhuB00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.53	41.0	3.84e-01	82.5%	88.2%
6y4rA01	1.25.40.590	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type IV / VI secretion system, DotU	0.51	43.0	3.86e-01	89.5%	85.3%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5059607	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.62	46.0	4.26e-01	79.8%	64.0%
3189549	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.60	45.0	4.49e-01	78.1%	87.0%
3937339	106.1.1.0 ↗	alpha arrays › Globin-like › Globin-like › Globin-like	0.58	43.0	3.86e-01	79.8%	95.2%
3446613	109.4.1.1567 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Frigida	0.56	42.0	3.71e-01	79.8%	61.2%
3637886	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	46.0	4.05e-01	95.6%	77.2%
3582971	109.4.1.276 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EDC4_C	0.54	42.0	3.87e-01	84.2%	83.8%
3532347	109.4.1.209 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Katanin_con80	0.54	44.0	3.96e-01	92.1%	82.8%
3907440	603.1.1.103 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF29732	0.53	43.0	3.77e-01	89.5%	96.6%
3274526	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	46.0	3.77e-01	98.2%	57.2%
3417527	109.4.1.11 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PI3Ka	0.51	38.0	3.27e-01	80.7%	46.7%
4977938	131.1.1.3 ↗	alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD	0.51	42.0	3.83e-01	92.1%	93.1%
3723010	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	41.0	2.87e-01	87.7%	87.0%
3593010	1075.1.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain	0.51	39.0	2.99e-01	83.3%	71.6%