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nuclear_antigen_EBNA-3B
Euk-VirHuman_gammaherpesvirus_4
nuclear_antigen_EBNA-3B__YP_401670__Human_gammaherpesvirus_4__10376
Identity
- Accession:
- YP_401670 ↗
- Protein ID:
- nuclear_antigen_EBNA-3B
- Kingdom:
- euk
Quality
48.6
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Lymphocryptovirus›
human_gammaherpesvirus_4
TaxID: 10376
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 104-159
D2
medium
residues 160-228
D3
medium
residues 229-346
Domain cluster:
rep: nuclear_antigen_EBNA-3A__YP_401669__Human_gammaherpesvirus_4__10376__D222-335
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05009.18 best | EBV-NA3 | 182.5 | 1.60e-53 | 100.0% | 46.9% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6qlyA02 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.55 | 37.0 | 4.03e-01 | 94.1% | 84.5% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.54 | 35.0 | 4.18e-01 | 95.8% | 98.7% |
| 3ggyA00 | 1.20.1260.60 | Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 | 0.53 | 45.0 | 3.94e-01 | 95.8% | 82.8% |
| 2lseA00 | 1.20.120.1360 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 41.0 | 4.45e-01 | 90.7% | 98.0% |
| 5d6oA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 44.0 | 3.28e-01 | 95.8% | 94.8% |
| 3ha4B00 | 1.20.58.690 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 39.0 | 3.94e-01 | 80.5% | 80.8% |
| 4hstA01 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.51 | 37.0 | 3.45e-01 | 75.4% | 99.3% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3849238 | 3736.1.1.1 ↗ | alpha superhelices › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 › NLRC4_HD2 | 0.59 | 44.0 | 4.53e-01 | 78.8% | 92.2% |
| 5010126 | 3745.1.1.1 ↗ | alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex | 0.59 | 44.0 | 3.35e-01 | 79.7% | 95.1% |
| 3453253 | 509.1.1.9 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH_ZNF598 | 0.55 | 36.0 | 3.99e-01 | 70.3% | 84.2% |
| 3238111 | 109.4.1.209 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Katanin_con80 | 0.51 | 40.0 | 3.66e-01 | 86.4% | 80.0% |
| 3226912 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.50 | 39.0 | 3.54e-01 | 84.7% | 90.9% |