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nuclear_egress_lamina_protein

Euk-Vir

Cercopithecine_alphaherpesvirus_9

nuclear_egress_lamina_protein__NP_077442__Cercopithecine_alphaherpesvirus_9__35246

Identity

Accession:
NP_077442 ↗
Protein ID:
nuclear_egress_lamina_protein
Kingdom:
euk

Quality

79.2 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Cercopithecine_alphaherpesvirus_9

TaxID: 35246

Cluster

View cluster (45 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 138-303
PDB
Domain cluster: rep: nuclear_egress_lamina_protein__YP_009176906__Testudinid_alphaherpesvirus_3__2560801__D127-287
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02718.21 best Herpes_UL31 171.8 1.90e-50 100.0% 68.1%
D2 medium residues 66-132
PDB
Domain cluster: rep: ORF69__YP_001129427__Human_gammaherpesvirus_8__37296__D61-124
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02718.21 best Herpes_UL31 72.2 5.40e-20 100.0% 27.0%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pfeA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.58 49.0 3.30e-01 98.5% 81.3%
5yk4A04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.57 41.0 3.37e-01 79.1% 58.8%
1v5uA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 3.43e-01 79.1% 86.3%
1zvpD00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.56 37.0 3.07e-01 70.1% 66.4%
5b7hB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 37.0 3.17e-01 70.1% 83.3%
2o8bB04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.53 37.0 3.12e-01 76.1% 57.3%
3thxB04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.53 40.0 3.34e-01 83.6% 63.3%
1i7qA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.53 41.0 2.49e-01 88.1% 85.9%
1ewqA04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.50 37.0 3.09e-01 83.6% 59.6%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 34.0 3.42e-01 70.1% 75.4%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5050812 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.61 49.0 3.33e-01 89.6% 37.6%
5045645 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.61 46.0 3.38e-01 82.1% 93.9%
5022607 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.60 41.0 2.82e-01 71.6% 62.8%
2813817 225.3.1.1 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Virion egress protein UL31 homolog › Virion egress protein UL31 homolog › Herpes_UL31 0.59 53.0 3.57e-01 97.0% 62.3%
5047310 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.58 40.0 2.85e-01 71.6% 37.6%
3719793 601.23.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III 0.58 40.0 2.62e-01 76.1% 23.0%
3325236 109.4.1.2327 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ, Importin_rep_4, Importin_rep_6, HEAT_GCN1, TPR_IMB1, TPR_IPO5 0.57 47.0 2.58e-01 94.0% 11.9%
3669263 109.4.1.1506 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ, Importin_rep_4, Importin_rep_6, TPR_IMB1, TPR_IPO5 0.56 45.0 2.57e-01 94.0% 14.9%
4663921 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.55 40.0 2.71e-01 80.6% 66.5%
5048830 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 38.0 3.18e-01 74.6% 81.6%
3210725 109.4.1.2814 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ, Importin_rep_4, Importin_rep_5, Importin_rep_6, HEAT_GCN1, TPR_IMB1, TPR_IPO5 0.54 44.0 2.46e-01 94.0% 12.3%
4943696 601.23.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.54 40.0 2.69e-01 83.6% 26.6%
3800055 601.23.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III 0.54 38.0 2.51e-01 76.1% 23.1%
3789210 601.23.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III 0.54 37.0 2.45e-01 73.1% 25.0%
3633705 109.4.1.2507 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_EZ, Importin_rep_4, Importin_rep_5, Importin_rep_6, TPR_IMB1 0.53 44.0 2.57e-01 100.0% 28.0%
4022212 109.4.1.2612 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, MMS19_C, HEAT_EZ, Importin_rep_4, Importin_rep_5, Importin_rep_6, TPR_IMB1, TPR_IPO5 0.53 44.0 2.44e-01 94.0% 9.1%
4355700 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.53 38.0 2.53e-01 77.6% 25.2%
3190723 109.4.1.1506 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ, Importin_rep_4, Importin_rep_6, TPR_IMB1, TPR_IPO5 0.53 45.0 2.52e-01 95.5% 11.2%
4199223 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.53 38.0 2.55e-01 79.1% 24.5%
3670241 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 42.0 2.78e-01 94.0% 34.5%
4078587 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.52 38.0 2.56e-01 82.1% 24.9%
3258549 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.52 39.0 2.56e-01 83.6% 24.9%
3476904 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.51 37.0 2.51e-01 83.6% 24.2%
5039575 2484.1.1.340 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Volactin 0.51 37.0 2.86e-01 79.1% 61.9%
3670532 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.50 37.0 2.51e-01 83.6% 24.9%
3421421 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.50 35.0 2.23e-01 74.6% 97.9%
3789678 601.23.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.50 36.0 2.39e-01 79.1% 23.9%
3717018 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.50 43.0 2.78e-01 100.0% 31.4%