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nuclear_egress_lamina_protein
Euk-VirElephant_endotheliotropic_herpesvirus_5
nuclear_egress_lamina_protein__YP_009052017__Elephant_endotheliotropic_herpesvirus_5__768738
Identity
- Accession:
- YP_009052017 ↗
- Protein ID:
- nuclear_egress_lamina_protein
- Kingdom:
- euk
Quality
74.9
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Proboscivirus›
Elephant_endotheliotropic_herpesvirus_5
TaxID: 768738
Cluster
View cluster (45 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 107-248
Domain cluster:
rep: nuclear_egress_lamina_protein__YP_009176906__Testudinid_alphaherpesvirus_3__2560801__D127-287
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02718.21 best | Herpes_UL31 | 125.7 | 2.40e-36 | 97.9% | 63.3% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bxiA00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.74 | 53.0 | 5.25e-01 | 72.5% | 90.4% |
| 4r3aA02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.73 | 52.0 | 5.28e-01 | 73.9% | 93.7% |
| 2m9kA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.58 | 33.0 | 3.95e-01 | 79.6% | 82.8% |
| 5cenA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 28.0 | 3.62e-01 | 71.1% | 84.6% |
| 5mmjh01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.56 | 29.0 | 3.79e-01 | 72.5% | 93.3% |
| 2qsrA01 | 3.90.1150.50 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain | 0.55 | 38.0 | 3.73e-01 | 70.4% | 87.1% |
| 1y4uB01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.55 | 41.0 | 3.69e-01 | 77.5% | 90.7% |
| 2uv8A06 | 3.30.70.2490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 25.0 | 3.45e-01 | 80.3% | 88.1% |
| 3if2A00 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.54 | 38.0 | 2.68e-01 | 71.8% | 55.8% |
| 1a1xA00 | 2.40.15.10 | Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 | 0.53 | 35.0 | 3.98e-01 | 70.4% | 87.7% |
| 3l1aA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.53 | 40.0 | 3.45e-01 | 78.9% | 80.1% |
| 5xuhA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.51 | 35.0 | 3.67e-01 | 76.8% | 79.2% |
| 1uscA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 40.0 | 3.79e-01 | 86.6% | 83.1% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1693530 | 225.3.1.1 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Virion egress protein UL31 homolog › Virion egress protein UL31 homolog › Herpes_UL31 | 0.93 | 87.0 | 7.23e-01 | 100.0% | 61.7% |
| 2813817 | 225.3.1.1 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Virion egress protein UL31 homolog › Virion egress protein UL31 homolog › Herpes_UL31 | 0.92 | 89.0 | 7.23e-01 | 100.0% | 62.7% |
| 3596774 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.68 | 47.0 | 5.12e-01 | 71.1% | 98.3% |
| 3702874 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.66 | 47.0 | 4.76e-01 | 73.2% | 81.4% |
| 3817811 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.63 | 33.0 | 4.16e-01 | 75.4% | 84.7% |
| 5046913 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.58 | 36.0 | 4.14e-01 | 76.1% | 85.4% |
| 3832697 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.57 | 32.0 | 3.75e-01 | 73.2% | 80.0% |
| 3643150 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.55 | 30.0 | 3.68e-01 | 71.8% | 84.7% |
| 3305434 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.55 | 32.0 | 3.78e-01 | 74.6% | 86.7% |
| 3667551 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.55 | 33.0 | 4.02e-01 | 71.8% | 93.3% |
| 3988220 | 4354.1.1.1 ↗ | a+b two layers › TRCF domain › TRCF domain › TRCF domain › TRCF | 0.55 | 38.0 | 3.70e-01 | 71.8% | 83.5% |
| 4996402 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.54 | 36.0 | 4.27e-01 | 73.2% | 100.0% |
| 3587799 | 4354.1.1.1 ↗ | a+b two layers › TRCF domain › TRCF domain › TRCF domain › TRCF | 0.54 | 39.0 | 3.79e-01 | 73.9% | 91.0% |
| 5012467 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.53 | 37.0 | 4.19e-01 | 91.5% | 93.6% |
| 4999898 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.53 | 33.0 | 3.98e-01 | 70.4% | 97.8% |
| 4998931 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.52 | 36.0 | 3.42e-01 | 73.9% | 58.0% |
| 3813809 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.52 | 31.0 | 3.54e-01 | 72.5% | 82.0% |
| 3454258 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.51 | 30.0 | 3.80e-01 | 90.8% | 97.6% |
| 3804630 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.50 | 34.0 | 3.64e-01 | 82.4% | 78.4% |
| 4092984 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.50 | 36.0 | 2.98e-01 | 73.9% | 80.0% |
D2
medium
residues 44-106