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nuclear_egress_lamina_protein

Euk-Vir

Equid_gammaherpesvirus_5

nuclear_egress_lamina_protein__YP_009118460__Equid_gammaherpesvirus_5__10371

Identity

Accession:
YP_009118460 ↗
Protein ID:
nuclear_egress_lamina_protein
Kingdom:
euk

Quality

71.7 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Percavirus› Equid_gammaherpesvirus_5

TaxID: 10371

Cluster

View cluster (31 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 189-337
PDB
Domain cluster: rep: nuclear_egress_lamina_protein__YP_009176906__Testudinid_alphaherpesvirus_3__2560801__D127-287
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02718.21 best Herpes_UL31 165.8 1.30e-48 99.3% 66.8%
D2 medium residues 108-145
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02718.21 best Herpes_UL31 44.9 1.20e-11 100.0% 15.9%
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5dx9A01 3.30.70.1020 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 0.70 53.0 4.36e-01 84.2% 69.4%
3bn0A00 3.30.1320.10 Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16 0.68 49.0 3.82e-01 81.6% 43.2%
1avaA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 45.0 4.09e-01 81.6% 56.9%
3df8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 46.0 3.36e-01 81.6% 41.3%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.62 44.0 3.77e-01 81.6% 43.7%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.61 43.0 3.65e-01 78.9% 42.3%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.61 44.0 3.26e-01 84.2% 64.4%
4byfC02 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 45.0 3.01e-01 84.2% 40.4%
2k4mA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 41.0 2.82e-01 84.2% 19.0%
2jsnA00 2.30.42.40 Mainly Beta › Roll › Pdz3 Domain › 0.59 44.0 3.59e-01 100.0% 83.3%
5nslA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 41.0 2.39e-01 78.9% 7.7%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.58 41.0 3.21e-01 78.9% 50.0%
2jllA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 41.0 3.19e-01 78.9% 46.3%
1zkkB00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.57 45.0 3.13e-01 100.0% 53.4%
2y23A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 3.12e-01 81.6% 42.3%
7sjlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 3.17e-01 81.6% 51.1%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.56 40.0 3.10e-01 81.6% 53.5%
5uv6A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 41.0 3.22e-01 81.6% 49.4%
2f2hA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 38.0 2.95e-01 78.9% 26.6%
2a07J00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.32e-01 84.2% 65.1%
7pluA01 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 38.0 2.87e-01 81.6% 25.7%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 3.71e-01 94.7% 68.1%
3sfvB01 3.30.450.390 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 41.0 2.93e-01 89.5% 36.6%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.10e-01 81.6% 48.4%
2k1mA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 39.0 3.05e-01 81.6% 44.2%
1a66A00 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.55 39.0 2.64e-01 81.6% 25.8%
7oode01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.55 37.0 3.18e-01 71.1% 61.8%
2kloA00 1.10.10.1420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA replication factor Cdt1, C-terminal WH domain 0.55 40.0 2.81e-01 84.2% 38.4%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 44.0 3.90e-01 100.0% 67.7%
2jjqA03 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 42.0 2.96e-01 92.1% 54.2%
1e88A03 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.54 36.0 3.62e-01 73.7% 95.2%
3tndB01 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.54 36.0 3.58e-01 71.1% 97.6%
4hziB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 41.0 2.66e-01 100.0% 87.3%
3thxB04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.53 38.0 2.83e-01 86.8% 26.6%
5fm5P00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 2.98e-01 81.6% 44.9%
1i7qA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.53 39.0 2.26e-01 97.4% 37.1%
2ql3A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 40.0 3.09e-01 89.5% 36.4%
2l9dA00 3.30.70.2340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF12112 family, DUF3579 0.53 39.0 2.99e-01 86.8% 75.0%
1knvB00 3.40.91.10 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.52 37.0 2.34e-01 92.1% 36.1%
1a7jA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 37.0 2.30e-01 78.9% 11.5%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.52 35.0 3.26e-01 76.3% 50.9%
6ui4A02 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 36.0 2.49e-01 78.9% 43.2%
2o30A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 36.0 3.04e-01 84.2% 70.7%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.08e-01 78.9% 73.9%
3h5xA04 1.20.960.20 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.51 34.0 2.83e-01 78.9% 71.6%
1ewqA04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.51 36.0 2.72e-01 89.5% 41.2%
8a5eD01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 36.0 3.08e-01 86.8% 50.6%
4i98C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 39.0 3.34e-01 100.0% 88.0%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2813817 225.3.1.1 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Virion egress protein UL31 homolog › Virion egress protein UL31 homolog › Herpes_UL31 0.90 79.0 4.75e-01 100.0% 16.1%
4027239 6045.1.1.1 ↗ a+b complex topology › C-terminal domain of BipA › C-terminal domain of BipA › C-terminal domain of BipA › BipA_C 0.68 51.0 3.63e-01 84.2% 55.6%
3289936 6045.1.1.1 ↗ a+b complex topology › C-terminal domain of BipA › C-terminal domain of BipA › C-terminal domain of BipA › BipA_C 0.68 50.0 3.52e-01 84.2% 53.8%
4995927 3715.1.1.0 ↗ a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e 0.67 49.0 3.88e-01 84.2% 52.2%
3163818 6045.1.1.1 ↗ a+b complex topology › C-terminal domain of BipA › C-terminal domain of BipA › C-terminal domain of BipA › BipA_C 0.66 48.0 3.49e-01 84.2% 56.0%
3592485 6045.1.1.0 ↗ a+b complex topology › C-terminal domain of BipA › C-terminal domain of BipA › C-terminal domain of BipA 0.63 47.0 3.40e-01 84.2% 62.5%
5047310 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.63 50.0 3.23e-01 97.4% 27.6%
4101939 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.62 44.0 2.64e-01 81.6% 70.8%
4643746 12.1.1.5 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amyl_C2 0.61 44.0 3.81e-01 84.2% 50.0%
4208861 2004.1.1.224 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › P-loop_SecA 0.60 50.0 3.15e-01 100.0% 16.7%
1759624 3282.1.1.1 ↗ a+b complex topology › LidA › LidA › LidA › LidA_Long_CC 0.60 42.0 2.38e-01 76.3% 7.4%
3670241 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 48.0 2.87e-01 100.0% 23.1%
3421421 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.60 42.0 2.49e-01 84.2% 8.3%
4456820 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.60 43.0 3.58e-01 84.2% 66.3%
4965711 101.1.2.673 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N 0.59 46.0 3.90e-01 92.1% 70.0%
5079818 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 44.0 3.42e-01 84.2% 51.1%
5029366 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 43.0 3.46e-01 84.2% 54.1%
5065392 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.59 43.0 3.26e-01 84.2% 43.8%
3503977 387.1.7.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Evasin-3 knottin scaffold 0.57 39.0 3.96e-01 78.9% 100.0%
3948681 7523.1.1.15 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.57 42.0 3.24e-01 92.1% 46.4%
5053694 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.57 42.0 3.60e-01 84.2% 65.7%
5039279 101.1.2.673 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N 0.57 45.0 3.52e-01 97.4% 53.7%
5028323 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 42.0 3.49e-01 84.2% 61.3%
3524423 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 39.0 3.62e-01 76.3% 56.4%
3587325 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.56 39.0 4.05e-01 86.8% 84.8%
5035255 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 42.0 3.22e-01 84.2% 48.4%
3511291 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.56 40.0 3.07e-01 81.6% 53.3%
3589156 268.2.1.1 ↗ a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr 0.55 40.0 2.58e-01 84.2% 80.0%
3488524 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 41.0 2.95e-01 81.6% 50.8%
3581426 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.55 39.0 3.44e-01 73.7% 55.0%
3488042 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.55 44.0 2.58e-01 97.4% 28.6%
3914633 389.1.3.0 ↗ few secondary structure elements › EGF-like › EGF-related › TNF receptor-like 0.54 40.0 3.76e-01 84.2% 92.0%
3789210 601.23.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III 0.54 39.0 2.40e-01 89.5% 16.2%
4981920 3008.1.1.0 ↗ a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.54 40.0 2.72e-01 81.6% 38.6%
4105312 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 40.0 3.30e-01 84.2% 72.5%
3426773 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.54 37.0 3.46e-01 76.3% 54.5%
3627103 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.54 36.0 3.60e-01 84.2% 65.0%
3706901 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.54 40.0 2.95e-01 89.5% 38.5%
3941172 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.53 43.0 3.41e-01 100.0% 92.6%
4967668 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.53 39.0 3.20e-01 84.2% 57.5%
3265321 810.1.1.8 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › PF25995 0.53 39.0 2.83e-01 84.2% 76.9%
3908615 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.52 40.0 3.54e-01 89.5% 61.7%
4517656 109.4.1.526 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Atx10homo_assoc 0.52 36.0 2.31e-01 86.8% 12.4%
3221395 101.1.2.118 ↗ alpha arrays › HTH › HTH › winged helix domain › Dcc1 0.52 39.0 3.37e-01 81.6% 67.7%
3474634 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.51 35.0 3.52e-01 78.9% 72.5%
4931177 3008.1.1.0 ↗ a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.51 37.0 2.97e-01 81.6% 63.2%
4995167 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.51 38.0 2.36e-01 78.9% 26.2%
3603654 1056.1.1.1 ↗ a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.51 36.0 2.30e-01 84.2% 13.8%
5005537 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.51 39.0 3.57e-01 89.5% 78.2%
4092211 80.1.1.0 ↗ beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain 0.51 40.0 3.19e-01 100.0% 54.7%
3994457 389.1.1.95 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_Mua-3 0.50 35.0 3.21e-01 73.7% 54.5%