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nuclear_egress_lamina_protein

Euk-Vir

Spheniscid_alphaherpesvirus_1

nuclear_egress_lamina_protein__YP_009342372__Spheniscid_alphaherpesvirus_1__2560777

Identity

Accession:
YP_009342372 ↗
Protein ID:
nuclear_egress_lamina_protein
Kingdom:
euk

Quality

77.8 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Spheniscid_alphaherpesvirus_1

TaxID: 2560777

Cluster

View cluster (45 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 91-129
PDB
Domain cluster: rep: nuclear_egress_lamina_protein__YP_009118460__Equid_gammaherpesvirus_5__10371__D108-145
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02718.21 best Herpes_UL31 51.8 9.00e-14 100.0% 15.9%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bn0A00 3.30.1320.10 Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16 0.67 48.0 3.71e-01 79.5% 43.2%
1avaA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 43.0 3.93e-01 76.9% 56.9%
4byfC02 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 44.0 2.97e-01 82.1% 41.0%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.59 41.0 3.23e-01 76.9% 50.0%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 42.0 3.25e-01 79.5% 50.5%
8egxA04 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.58 41.0 3.24e-01 82.1% 43.6%
2jsnA00 2.30.42.40 Mainly Beta › Roll › Pdz3 Domain › 0.58 43.0 3.51e-01 97.4% 83.3%
1ewqA04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.57 41.0 2.99e-01 87.2% 41.2%
2jllA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 3.11e-01 76.9% 46.3%
5uv6A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 3.14e-01 76.9% 48.3%
3h5xA04 1.20.960.20 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.56 39.0 3.11e-01 76.9% 71.6%
2mhyA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.56 40.0 3.77e-01 87.2% 78.9%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.56 38.0 3.02e-01 76.9% 52.5%
5dn6I00 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.56 39.0 3.37e-01 76.9% 97.3%
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.25e-01 79.5% 73.3%
2f2hA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 37.0 2.88e-01 76.9% 26.6%
7sjlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.11e-01 79.5% 51.1%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.12e-01 79.5% 54.4%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.44e-01 97.4% 85.1%
5nslA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 37.0 2.17e-01 76.9% 7.7%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 41.0 2.48e-01 94.9% 27.7%
4i98C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.26e-01 82.1% 77.3%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 43.0 3.84e-01 100.0% 67.7%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.53 42.0 3.07e-01 94.9% 61.9%
1i7qA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.52 36.0 2.11e-01 89.7% 37.1%
4a5pB01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.52 37.0 2.74e-01 79.5% 59.2%
1flcB00 3.90.20.10 Alpha Beta › Alpha-Beta Complex › Hemagglutinin Ectodomain; Chain B › 0.51 37.0 2.63e-01 87.2% 93.2%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 2.94e-01 79.5% 48.4%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 2.94e-01 79.5% 56.0%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3592485 6045.1.1.0 ↗ a+b complex topology › C-terminal domain of BipA › C-terminal domain of BipA › C-terminal domain of BipA 0.63 45.0 3.33e-01 82.1% 62.5%
3499542 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.62 44.0 4.28e-01 76.9% 68.9%
3999102 389.1.1.133 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_Hmr-1 0.62 42.0 4.13e-01 74.4% 75.6%
3670241 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 49.0 2.96e-01 100.0% 23.4%
4208861 2004.1.1.224 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › P-loop_SecA 0.60 49.0 3.12e-01 100.0% 16.7%
4643746 12.1.1.5 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amyl_C2 0.60 43.0 3.75e-01 82.1% 50.0%
3229266 388.1.1.0 ↗ few secondary structure elements › Huristasin-like › Huristasin-like › Huristasin-like 0.59 40.0 4.28e-01 71.8% 90.0%
3914633 389.1.3.0 ↗ few secondary structure elements › EGF-like › EGF-related › TNF receptor-like 0.58 42.0 3.93e-01 79.5% 90.0%
3573798 389.1.1.95 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_Mua-3 0.58 39.0 4.06e-01 71.8% 80.0%
4101939 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.58 41.0 2.47e-01 79.5% 70.8%
3421421 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.58 41.0 2.40e-01 82.1% 8.3%
4027757 101.1.2.137 ↗ alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.58 47.0 3.20e-01 100.0% 40.6%
3233080 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.58 39.0 4.12e-01 74.4% 100.0%
4456820 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.58 42.0 3.45e-01 82.1% 66.3%
3627103 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.57 37.0 3.72e-01 82.1% 62.5%
4078587 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.57 40.0 2.45e-01 82.1% 10.5%
3503977 387.1.7.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Evasin-3 knottin scaffold 0.57 39.0 4.04e-01 79.5% 100.0%
3266935 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.57 37.0 3.94e-01 76.9% 86.7%
3488042 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.56 43.0 2.54e-01 94.9% 28.9%
3908615 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.56 38.0 3.44e-01 74.4% 55.0%
5040640 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.55 38.0 3.26e-01 82.1% 76.2%
3941172 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.55 45.0 3.50e-01 94.9% 91.6%
3706901 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.54 40.0 2.97e-01 89.7% 39.3%
3265321 810.1.1.8 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › PF25995 0.54 39.0 2.82e-01 82.1% 76.9%
3930573 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.53 42.0 3.68e-01 92.3% 98.5%
4551803 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.53 36.0 3.09e-01 82.1% 75.3%
3994457 389.1.1.95 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_Mua-3 0.53 37.0 3.36e-01 71.8% 56.4%
3474634 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.53 36.0 3.62e-01 71.8% 72.5%
5061423 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.53 41.0 2.48e-01 94.9% 68.1%
3769632 389.1.1.7 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA 0.52 40.0 3.08e-01 89.7% 40.0%
3813779 7015.1.1.1 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC 0.52 39.0 2.51e-01 100.0% 26.3%
3581606 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 35.0 2.33e-01 71.8% 72.1%
3385336 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.51 39.0 2.47e-01 100.0% 57.3%
3965403 223.3.1.2 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Peptidase_S11 0.51 39.0 2.78e-01 89.7% 79.3%
158313 4967.1.1.2 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › RdRP_1 0.51 36.0 2.74e-01 87.2% 55.9%
4199223 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.50 36.0 2.22e-01 87.2% 11.2%
3670532 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.50 35.0 2.15e-01 82.1% 10.2%
D2 high residues 139-306
PDB
Domain cluster: rep: nuclear_egress_lamina_protein__YP_009176906__Testudinid_alphaherpesvirus_3__2560801__D127-287
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02718.21 best Herpes_UL31 174.2 3.40e-51 100.0% 68.1%