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nuclear_egress_membrane_protein
Euk-VirPsittacid_alphaherpesvirus_1
nuclear_egress_membrane_protein__NP_944407__Psittacid_alphaherpesvirus_1__50294
Identity
- Accession:
- NP_944407 ↗
- Protein ID:
- nuclear_egress_membrane_protein
- Kingdom:
- euk
Quality
62.1
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Iltovirus›
Psittacid_alphaherpesvirus_1
TaxID: 50294
Cluster
View cluster (28 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-159
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04541.20 best | Herpes_U34 | 109.9 | 1.20e-31 | 100.0% | 89.8% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1f94A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.61 | 26.0 | 3.76e-01 | 88.0% | 92.1% |
| 3hh7A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.57 | 25.0 | 3.67e-01 | 83.5% | 96.9% |
| 1hq0A00 | 3.60.100.10 | Alpha Beta › 4-Layer Sandwich › Cytotoxic necrotizing factor 1 (CNF1) › Cytotoxic necrotizing factor, Rho-activating domain | 0.50 | 45.0 | 3.72e-01 | 100.0% | 81.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4802986 | 3984.1.1.1 ↗ | beta sandwiches › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpes_U34 | 0.85 | 78.0 | 7.37e-01 | 100.0% | 82.3% |
| 4802990 | 3984.1.1.1 ↗ | beta sandwiches › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpes_U34 | 0.82 | 79.0 | 7.42e-01 | 100.0% | 86.3% |
| 2813818 | 3984.1.1.1 ↗ | beta sandwiches › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpes_U34 | 0.82 | 78.0 | 7.44e-01 | 100.0% | 88.8% |
| 3936822 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.60 | 27.0 | 4.04e-01 | 84.2% | 97.1% |
| 3299630 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.56 | 29.0 | 3.51e-01 | 98.7% | 73.3% |
| 3790807 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.56 | 28.0 | 3.84e-01 | 93.7% | 95.0% |
| 3682896 | 1.1.1.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C+TAXi_N | 0.55 | 41.0 | 3.10e-01 | 77.2% | 96.9% |
| 3672439 | 1.1.1.27 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_N | 0.53 | 40.0 | 3.01e-01 | 77.2% | 97.6% |