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nuclear_egress_membrane_protein

Euk-Vir

Elephant_endotheliotropic_herpesvirus_5

nuclear_egress_membrane_protein__YP_009052014__Elephant_endotheliotropic_herpesvirus_5__768738

Identity

Accession:
YP_009052014 ↗
Protein ID:
nuclear_egress_membrane_protein
Kingdom:
euk

Quality

77.8 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Proboscivirus› Elephant_endotheliotropic_herpesvirus_5

TaxID: 768738

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-157
PDB
Domain cluster: rep: nuclear_egress_membrane_protein__NP_944407__Psittacid_alphaherpesvirus_1__50294__D2-159
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04541.20 best Herpes_U34 99.7 1.60e-28 100.0% 89.2%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hh7A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.59 25.0 3.65e-01 76.3% 89.2%
1xmbA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 33.0 3.95e-01 96.1% 83.2%
1m55A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.57 35.0 3.24e-01 72.4% 47.7%
1ywhA01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.53 28.0 3.73e-01 92.8% 96.3%
1ywxA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 33.0 3.95e-01 70.4% 100.0%
1jw3A00 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.52 34.0 3.59e-01 92.8% 72.1%
3ndcA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.52 31.0 3.41e-01 94.7% 71.5%
1z1dB00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.51 32.0 3.46e-01 93.4% 72.5%
3go9A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.50 39.0 3.45e-01 80.9% 80.2%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4802986 3984.1.1.1 ↗ beta sandwiches › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpes_U34 0.90 84.0 7.82e-01 100.0% 81.2%
4802990 3984.1.1.1 ↗ beta sandwiches › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpes_U34 0.83 80.0 7.45e-01 100.0% 85.8%
2813818 3984.1.1.1 ↗ beta sandwiches › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpes_U34 0.80 76.0 7.16e-01 100.0% 87.7%
4997522 304.12.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.70 33.0 4.45e-01 73.7% 85.0%
3186912 312.1.1.6 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_2,CwfJ_C_1 0.64 47.0 3.82e-01 75.7% 73.3%
3238561 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.63 37.0 4.62e-01 84.2% 95.6%
3754123 382.1.1.2 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP 0.59 31.0 4.11e-01 94.7% 92.9%
3553704 382.1.1.1 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.58 33.0 4.21e-01 84.2% 95.6%
3882540 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.57 32.0 4.00e-01 84.2% 94.1%
3689642 312.1.1.6 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_2,CwfJ_C_1 0.57 47.0 3.97e-01 88.8% 72.2%
3176394 304.6.1.12 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › GDH_2nd 0.56 40.0 3.56e-01 74.3% 95.6%
3929565 382.1.1.17 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › ET 0.55 29.0 3.83e-01 84.9% 91.8%
3744424 312.1.1.6 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_2,CwfJ_C_1 0.54 46.0 4.12e-01 92.1% 70.7%
3522165 382.1.1.1 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.53 29.0 3.77e-01 83.6% 95.3%
3887625 382.1.1.4 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › ecTbetaR2 0.53 35.0 4.14e-01 97.4% 98.1%
3616637 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 29.0 3.73e-01 84.2% 96.5%
3859192 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 30.0 3.84e-01 86.2% 97.8%
3907468 382.1.1.2 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP 0.52 27.0 3.50e-01 86.8% 92.5%
3212786 382.1.1.17 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › ET 0.51 30.0 3.76e-01 84.9% 93.7%
3499895 382.1.1.6 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › QVR 0.51 31.0 3.74e-01 82.9% 93.7%
4881886 382.1.1.4 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › ecTbetaR2 0.51 34.0 3.94e-01 96.7% 94.5%
3213450 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 29.0 3.63e-01 95.4% 94.4%
3629393 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 25.0 3.44e-01 76.3% 91.3%
3236364 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 32.0 3.78e-01 96.1% 95.0%
3375508 304.6.1.0 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.50 38.0 3.04e-01 78.9% 83.9%