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nuclear_egress_membrane_protein
Euk-VirLeporid_alphaherpesvirus_4
nuclear_egress_membrane_protein__YP_009230164__Leporid_alphaherpesvirus_4__481315
Identity
- Accession:
- YP_009230164 ↗
- Protein ID:
- nuclear_egress_membrane_protein
- Kingdom:
- euk
Quality
74.5
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Simplexvirus›
Leporid_alphaherpesvirus_4
TaxID: 481315
Cluster
View cluster (28 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-172
Domain cluster:
rep: nuclear_egress_membrane_protein__NP_944407__Psittacid_alphaherpesvirus_1__50294__D2-159
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04541.20 best | Herpes_U34 | 179.5 | 5.40e-53 | 100.0% | 88.6% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hq0A00 | 3.60.100.10 | Alpha Beta › 4-Layer Sandwich › Cytotoxic necrotizing factor 1 (CNF1) › Cytotoxic necrotizing factor, Rho-activating domain | 0.54 | 48.0 | 3.85e-01 | 95.5% | 87.8% |
| 5xbtA01 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.53 | 38.0 | 3.97e-01 | 75.0% | 91.8% |
| 2bvfA03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.52 | 41.0 | 3.69e-01 | 80.8% | 95.2% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2813818 | 3984.1.1.1 ↗ | beta sandwiches › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpes_U34 | 0.96 | 94.0 | 8.85e-01 | 100.0% | 87.2% |
| 4802986 | 3984.1.1.1 ↗ | beta sandwiches › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpes_U34 | 0.81 | 73.0 | 6.94e-01 | 100.0% | 81.2% |
| 4802990 | 3984.1.1.1 ↗ | beta sandwiches › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpesvirus nuclear egress complex subunit M50 N-terminal domain › Herpes_U34 | 0.81 | 77.0 | 7.27e-01 | 100.0% | 85.2% |
| 3747348 | 382.1.1.3 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Activin_recp | 0.57 | 36.0 | 4.32e-01 | 91.7% | 97.0% |
| 3882540 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.55 | 31.0 | 4.05e-01 | 71.2% | 100.0% |
| 3790807 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.55 | 28.0 | 3.87e-01 | 96.8% | 96.2% |
| 3481359 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 26.0 | 3.20e-01 | 96.2% | 69.0% |
| 3216452 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.54 | 31.0 | 4.00e-01 | 94.9% | 98.9% |
| 2718202 | 288.1.1.3 ↗ | a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1 | 0.54 | 47.0 | 3.83e-01 | 95.5% | 87.4% |
| 3799573 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.53 | 34.0 | 3.89e-01 | 80.1% | 87.0% |
| 3758728 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.52 | 33.0 | 3.99e-01 | 94.9% | 100.0% |
| 3286953 | 886.1.1.3 ↗ | a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Cass2 | 0.52 | 37.0 | 3.95e-01 | 73.7% | 90.0% |
| 5022903 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 28.0 | 3.18e-01 | 71.8% | 71.3% |
| 3935263 | 328.1.1.1 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba | 0.51 | 30.0 | 3.58e-01 | 71.8% | 91.6% |