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nuclear_inclusion_a_protein_protease

Euk-Vir

Habenaria_mosaic_virus

nuclear_inclusion_a_protein_protease__YP_008320589__Habenaria_mosaic_virus__1324128

Identity

Accession:
YP_008320589 ↗
Protein ID:
nuclear_inclusion_a_protein_protease
Kingdom:
euk

Quality

89.9 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Habenaria_mosaic_virus

TaxID: 1324128

Cluster

View cluster (187 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-97_183-204
PDB
Domain cluster: rep: NIa-VPg-Pro_protein__YP_002956094__Triticum_mosaic_virus__431317__D201-288_375-394
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00863.26 best Peptidase_C4 50.2 2.80e-13 94.4% 36.1%
D2 medium residues 99-181_205-242
PDB
Domain cluster: rep: ORF1a__YP_009047079__Human_astrovirus_BF34__1518575__D522-618
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00863.26 best Peptidase_C4 45.3 9.40e-12 68.6% 30.7%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lvbA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.86 67.0 7.12e-01 99.2% 89.8%
1zyoA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.78 52.0 5.66e-01 72.7% 81.2%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 46.0 4.27e-01 73.6% 94.7%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 33.0 3.87e-01 98.3% 80.8%
4rqyA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 47.0 4.70e-01 95.0% 85.4%
4p0dA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.95e-01 98.3% 83.5%
1k5dB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 35.0 3.33e-01 70.2% 81.5%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2710030 1.1.5.12 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S39 0.78 52.0 4.39e-01 72.7% 42.9%
3962616 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.76 54.0 4.74e-01 72.7% 57.1%
3452728 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.76 54.0 4.40e-01 72.7% 46.8%
3545090 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.75 57.0 4.56e-01 77.7% 57.3%
3637221 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.75 53.0 4.02e-01 72.7% 40.0%
3532116 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.74 52.0 4.24e-01 72.7% 43.7%
257 1.1.5.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C4 0.73 69.0 5.45e-01 98.3% 55.7%
3364575 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.69 48.0 4.38e-01 71.9% 87.2%
5039871 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.55 49.0 3.81e-01 95.9% 92.3%
3941331 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 40.0 4.08e-01 86.8% 98.3%