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nuclear_phosphoprotein

Euk-Vir

Hawaiian_green_turtle_herpesvirus

nuclear_phosphoprotein__YP_009207092__Hawaiian_green_turtle_herpesvirus__70564

Identity

Accession:: YP_009207092 ↗
Protein ID:: nuclear_phosphoprotein
Kingdom:: euk

Quality

73.4 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Scutavirus› Hawaiian_green_turtle_herpesvirus

TaxID: 70564

Cluster

View cluster (45 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 125-295

PDB

Domain cluster: rep: nuclear_egress_lamina_protein__YP_009176906__Testudinid_alphaherpesvirus_3__2560801__D127-287

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02718.21 best	Herpes_UL31	107.0	1.20e-30	98.8%	69.0%

D2 medium residues 53-124

PDB

Domain cluster: rep: ORF69__YP_001129427__Human_gammaherpesvirus_8__37296__D61-124

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02718.21 best	Herpes_UL31	63.5	2.40e-17	97.2%	28.8%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3lssA02	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.64	47.0	3.13e-01	80.6%	77.0%
5yk4A04	1.10.1420.10	Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 ›	0.61	42.0	3.45e-01	72.2%	58.8%
1ewqA04	1.10.1420.10	Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 ›	0.59	41.0	3.37e-01	72.2%	58.8%
3thxB04	1.10.1420.10	Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 ›	0.54	37.0	3.19e-01	73.6%	60.9%
2i4lA01	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.51	40.0	2.65e-01	90.3%	78.5%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2813817	225.3.1.1 ↗	a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Virion egress protein UL31 homolog › Virion egress protein UL31 homolog › Herpes_UL31	0.65	54.0	3.69e-01	87.5%	64.0%
4199223	601.23.1.4 ↗	alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III	0.62	43.0	2.80e-01	72.2%	24.5%
3742193	314.1.1.9 ↗	a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His	0.58	43.0	2.82e-01	81.9%	89.4%
3669263	109.4.1.1506 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ, Importin_rep_4, Importin_rep_6, TPR_IMB1, TPR_IPO5	0.58	44.0	2.52e-01	86.1%	17.4%
3450997	3012.1.1.1 ↗	a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase	0.57	40.0	3.66e-01	75.0%	93.0%
3719364	601.23.1.1 ↗	alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III	0.57	44.0	2.84e-01	81.9%	51.4%
3325236	109.4.1.2327 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ, Importin_rep_4, Importin_rep_6, HEAT_GCN1, TPR_IMB1, TPR_IPO5	0.57	44.0	2.46e-01	87.5%	14.1%
5025604	314.1.1.1 ↗	a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2	0.55	39.0	2.62e-01	75.0%	88.7%
3670241	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	41.0	2.80e-01	87.5%	33.6%
3210725	109.4.1.2814 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ, Importin_rep_4, Importin_rep_5, Importin_rep_6, HEAT_GCN1, TPR_IMB1, TPR_IPO5	0.53	43.0	2.41e-01	93.1%	15.0%
3190723	109.4.1.1506 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ, Importin_rep_4, Importin_rep_6, TPR_IMB1, TPR_IPO5	0.53	42.0	2.41e-01	90.3%	13.0%
4022212	109.4.1.2612 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, MMS19_C, HEAT_EZ, Importin_rep_4, Importin_rep_5, Importin_rep_6, TPR_IMB1, TPR_IPO5	0.52	41.0	2.31e-01	90.3%	10.7%
3633705	109.4.1.2507 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_EZ, Importin_rep_4, Importin_rep_5, Importin_rep_6, TPR_IMB1	0.51	41.0	2.40e-01	93.1%	20.2%