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nuclear_protein_UL3

Euk-Vir

Cervid_alphaherpesvirus_3

nuclear_protein_UL3__YP_010087600__Cervid_alphaherpesvirus_3__2115790

Identity

Accession:
YP_010087600 ↗
Protein ID:
nuclear_protein_UL3
Kingdom:
euk

Quality

65.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-23_72-120_140-220
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF03369.19 best Herpes_UL3 113.3 1.80e-32 46.4% 51.1%
PF03369.19 Herpes_UL3 84.4 1.60e-23 31.4% 34.1%
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nyhA00 3.30.70.1240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › DOPA-like domains 0.81 44.0 5.06e-01 75.2% 71.6%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.75 44.0 5.63e-01 71.9% 98.9%
2pgcA02 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.74 47.0 5.59e-01 70.6% 93.4%
1o51A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 43.0 5.50e-01 70.6% 100.0%
2pd1A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 45.0 5.57e-01 71.2% 100.0%
4ushA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 45.0 5.37e-01 77.8% 92.2%
3c19A01 3.30.70.1380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transcriptional regulatory protein pf0864 domain like 0.71 43.0 5.16e-01 70.6% 90.9%
4mt1A02 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.70 46.0 5.55e-01 75.2% 100.0%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 45.0 5.40e-01 75.8% 98.0%
4dn9B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 44.0 5.31e-01 74.5% 100.0%
1lq9A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 46.0 5.27e-01 71.2% 92.9%
1f5aA01 3.30.70.590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain 0.68 46.0 5.46e-01 76.5% 98.1%
1x7vA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 44.0 5.33e-01 75.2% 100.0%
2bbeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 45.0 5.31e-01 77.1% 98.1%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 44.0 5.32e-01 76.5% 100.0%
1iujA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 45.0 5.34e-01 70.6% 100.0%
3kg0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 43.0 5.24e-01 71.9% 100.0%
5t0oA02 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.67 45.0 5.35e-01 75.2% 100.0%
6gdxA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 46.0 5.40e-01 79.7% 99.1%
1sqeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 44.0 5.24e-01 71.2% 100.0%
4dpoB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 44.0 5.25e-01 70.6% 100.0%
1u8sA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.67 38.0 4.87e-01 71.2% 98.8%
5d4nC00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 42.0 5.07e-01 75.8% 98.0%
3hx9B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 43.0 5.11e-01 71.2% 100.0%
4iyqA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 46.0 5.37e-01 78.4% 100.0%
3mgjA00 3.30.70.2690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain 0.66 42.0 5.08e-01 70.6% 100.0%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 44.0 5.18e-01 77.8% 97.2%
3bm7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 44.0 5.13e-01 76.5% 96.2%
3luyA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.66 39.0 4.90e-01 71.9% 100.0%
4cyuA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.66 46.0 4.65e-01 71.9% 85.1%
3kkfA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 44.0 5.15e-01 74.5% 100.0%
4x0qA03 3.30.70.370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 45.0 4.71e-01 81.0% 77.6%
5abxA00 3.30.760.10 Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e 0.63 43.0 4.11e-01 71.9% 60.1%
3go9A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.63 51.0 4.54e-01 85.6% 91.7%
6ofsA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.63 49.0 4.57e-01 80.4% 100.0%
5ixuA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 41.0 4.86e-01 70.6% 100.0%
3mwbB03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 39.0 4.73e-01 83.0% 100.0%
4za1C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 37.0 4.66e-01 70.6% 100.0%
2qswA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 36.0 4.53e-01 79.7% 97.8%
3mcnA01 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.61 43.0 4.39e-01 71.2% 81.0%
3f44A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 50.0 4.52e-01 88.9% 96.7%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.60 49.0 4.80e-01 85.6% 95.2%
1l2mA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.59 42.0 4.68e-01 81.0% 94.1%
3gwbA01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.58 47.0 4.24e-01 85.6% 88.3%
1r89A03 3.30.70.590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain 0.58 46.0 4.92e-01 83.0% 96.3%
3mcsA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 51.0 4.58e-01 96.1% 97.2%
2apoA03 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 35.0 4.28e-01 70.6% 98.9%
3aawA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.57 42.0 4.14e-01 75.8% 74.5%
1wvfA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.57 46.0 3.93e-01 83.0% 100.0%
1pbuA00 3.30.70.1010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain 0.57 40.0 3.95e-01 75.8% 67.3%
1ie0A00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.57 44.0 4.39e-01 80.4% 97.4%
2jgbA01 3.30.760.10 Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e 0.56 45.0 4.30e-01 83.0% 88.4%
1wvqA00 3.40.1520.10 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like 0.56 40.0 3.98e-01 84.3% 69.9%
3f62A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 4.26e-01 83.7% 95.4%
4ud8A03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.53 41.0 3.91e-01 82.4% 99.5%
2atzA00 3.90.920.20 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like 0.52 45.0 4.34e-01 93.5% 81.2%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4945381 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.74 42.0 5.51e-01 70.6% 100.0%
4098707 304.159.1.1 a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › Lant_dehydr_C 0.74 48.0 5.80e-01 79.7% 99.0%
4031689 304.28.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran 0.74 46.0 5.67e-01 75.8% 98.9%
5177 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.73 47.0 5.74e-01 79.1% 100.0%
4184306 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.73 42.0 5.34e-01 74.5% 96.7%
5043596 304.15.1.0 a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain 0.72 49.0 5.58e-01 80.4% 91.3%
3511024 304.28.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran 0.71 46.0 5.54e-01 75.2% 99.0%
5046778 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.70 42.0 5.03e-01 80.4% 90.0%
1312366 304.28.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran 0.70 42.0 5.29e-01 74.5% 100.0%
4240079 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.69 44.0 5.32e-01 78.4% 97.0%
4038066 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.69 47.0 5.29e-01 75.8% 91.2%
3955607 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.69 44.0 5.33e-01 70.6% 99.0%
5157 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.69 46.0 5.27e-01 71.2% 92.9%
3348724 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.69 44.0 5.22e-01 88.2% 94.3%
3942509 304.4.1.3 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII 0.68 42.0 5.18e-01 77.1% 98.9%
3634393 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.68 44.0 5.22e-01 73.9% 98.0%
5160 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.68 45.0 5.34e-01 70.6% 100.0%
4316814 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 40.0 4.89e-01 71.2% 93.6%
3721344 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.67 42.0 5.12e-01 70.6% 100.0%
4946218 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.66 41.0 4.90e-01 73.2% 90.5%
3931549 317.1.1.1 a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E 0.66 44.0 4.19e-01 70.6% 58.3%
3731471 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.66 44.0 5.05e-01 72.5% 93.6%
1168089 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.66 47.0 5.22e-01 85.0% 92.7%
3274324 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.65 44.0 5.00e-01 72.5% 93.6%
3732824 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.65 40.0 4.95e-01 71.9% 100.0%
3604508 304.8.1.4 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.65 39.0 4.83e-01 73.2% 100.0%
3284008 304.4.1.57 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › MFS_3 0.64 43.0 5.12e-01 75.2% 100.0%
4170426 304.8.1.70 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Phage_GPA 0.63 51.0 4.09e-01 83.7% 87.7%
3260874 304.4.1.15 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › NIPSNAP 0.63 42.0 4.83e-01 70.6% 93.6%
4511949 304.48.1.74 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Phage_GPA 0.63 51.0 4.33e-01 83.7% 85.4%
3968919 304.4.1.57 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › MFS_3 0.63 44.0 4.80e-01 73.9% 87.2%
3947798 304.8.1.70 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Phage_GPA 0.63 51.0 4.13e-01 85.0% 75.4%
3597381 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.63 41.0 4.85e-01 71.2% 100.0%
4173640 304.55.1.27 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Phage_GPA 0.62 51.0 4.15e-01 85.0% 90.9%
3789222 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.62 43.0 4.94e-01 79.1% 99.1%
3277947 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.62 49.0 4.96e-01 83.7% 84.0%
4962969 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.61 44.0 4.91e-01 74.5% 98.3%
2455618 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.61 44.0 4.80e-01 74.5% 94.5%
3915011 389.1.1.7 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA 0.61 43.0 4.23e-01 71.2% 69.4%
3952578 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.61 49.0 4.18e-01 84.3% 89.5%
4682347 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.61 48.0 3.96e-01 83.0% 79.3%
4309132 304.6.1.0 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.60 48.0 4.06e-01 82.4% 81.2%
4243894 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.60 48.0 4.00e-01 83.0% 80.8%
3675857 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.59 37.0 3.52e-01 71.2% 50.8%
4521182 304.6.1.0 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.59 47.0 4.00e-01 83.0% 87.9%
4011130 304.6.1.0 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.59 47.0 3.91e-01 83.0% 81.2%
4035986 304.6.1.0 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.59 47.0 3.97e-01 82.4% 81.7%
4263302 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.59 47.0 3.96e-01 84.3% 81.6%
4622719 304.6.1.0 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.59 46.0 3.98e-01 83.0% 87.8%
4018691 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.59 46.0 3.87e-01 83.0% 80.8%
4407903 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.58 46.0 3.87e-01 83.0% 82.7%
4015784 304.6.1.0 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.58 46.0 3.83e-01 83.0% 80.0%
4486659 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.58 45.0 3.84e-01 83.0% 81.2%
4189847 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.57 46.0 4.71e-01 83.7% 90.3%
4218099 304.55.1.1 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Gemini_AL1 0.54 41.0 4.32e-01 79.1% 95.6%
5078835 304.6.1.1 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.52 42.0 3.57e-01 83.7% 89.2%