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nuclear_protein_UL4
Euk-VirPsittacid_alphaherpesvirus_1
nuclear_protein_UL4__NP_944436__Psittacid_alphaherpesvirus_1__50294
Identity
- Accession:
- NP_944436 ↗
- Protein ID:
- nuclear_protein_UL4
- Kingdom:
- euk
Quality
61.0
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Iltovirus›
Psittacid_alphaherpesvirus_1
TaxID: 50294
Cluster
View cluster (30 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-144
Domain cluster:
rep: U79_protein__YP_009253983__Macaca_nemestrina_herpesvirus_7__1846169__D2-128
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03277.19 best | Herpes_UL4 | 162.8 | 1.10e-47 | 100.0% | 77.5% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5fl3A01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.66 | 40.0 | 4.64e-01 | 90.9% | 85.0% |
| 2ewvA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.65 | 39.0 | 4.56e-01 | 90.9% | 84.3% |
| 2vdfA00 | 2.40.128.100 | Mainly Beta › Beta Barrel › Lipocalin › OPCA outer membrane adhesin/invasin | 0.64 | 49.0 | 4.20e-01 | 80.4% | 88.0% |
| 4xpmB00 | 3.40.1840.10 | Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like | 0.61 | 30.0 | 4.21e-01 | 90.2% | 98.5% |
| 5akpA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.61 | 40.0 | 4.20e-01 | 90.9% | 73.6% |
| 7d8gA01 | 2.40.380.10 | Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like | 0.60 | 43.0 | 4.09e-01 | 90.2% | 62.9% |
| 4ggtB00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.60 | 40.0 | 4.55e-01 | 81.8% | 92.5% |
| 3fg8A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.60 | 40.0 | 4.51e-01 | 91.6% | 90.6% |
| 6g1yA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.60 | 37.0 | 4.03e-01 | 89.5% | 73.3% |
| 2mj7A00 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.57 | 34.0 | 3.46e-01 | 100.0% | 58.2% |
| 3l4rA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 40.0 | 4.02e-01 | 83.9% | 70.9% |
| 2lnjA00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.55 | 37.0 | 3.48e-01 | 92.3% | 55.9% |
| 1ospO02 | 3.90.930.1 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.54 | 35.0 | 3.54e-01 | 84.6% | 63.0% |
| 6v04A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 39.0 | 4.15e-01 | 100.0% | 85.0% |
| 1x53A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 38.0 | 4.00e-01 | 100.0% | 80.9% |
| 1o8vA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 39.0 | 4.09e-01 | 78.3% | 89.5% |
| 1k5dB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 37.0 | 3.76e-01 | 73.4% | 71.2% |
| 7yh1A01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.52 | 30.0 | 3.38e-01 | 90.9% | 70.2% |
| 3q6aB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 37.0 | 3.85e-01 | 100.0% | 77.6% |
| 2qziA00 | 3.40.1720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Streptococcus thermophilus LMG 18311 protein like › Streptococcus thermophilus LMG 18311 protein like | 0.52 | 35.0 | 4.07e-01 | 73.4% | 96.0% |
| 5jpnC02 | 2.40.50.120 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 34.0 | 3.33e-01 | 83.9% | 59.2% |
| 1nqfA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.51 | 45.0 | 3.22e-01 | 95.1% | 46.7% |
| 2m89A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 38.0 | 3.94e-01 | 100.0% | 82.8% |
| 2yn5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 25.0 | 3.24e-01 | 83.2% | 84.8% |
| 2p4bB02 | 3.30.200.100 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain | 0.50 | 28.0 | 3.40e-01 | 80.4% | 81.6% |
| 1v7wA01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.50 | 42.0 | 3.28e-01 | 88.8% | 93.0% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3697524 | 9.2.1.7 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › PF30970 | 0.67 | 39.0 | 4.87e-01 | 70.6% | 92.2% |
| 5060754 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 37.0 | 4.06e-01 | 88.8% | 68.7% |
| 884 | 5084.2.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPT-like › OMPT-like › OpcA | 0.64 | 49.0 | 4.20e-01 | 80.4% | 88.0% |
| 5043414 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.64 | 50.0 | 5.13e-01 | 80.4% | 86.7% |
| 3785038 | 9.13.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 | 0.63 | 54.0 | 5.11e-01 | 93.7% | 92.6% |
| 4541227 | 9.13.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 | 0.63 | 55.0 | 5.19e-01 | 95.8% | 97.1% |
| 5032631 | 5084.3.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter | 0.63 | 50.0 | 4.16e-01 | 83.9% | 91.4% |
| 2796929 | 223.1.1.12 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 | 0.60 | 41.0 | 4.44e-01 | 92.3% | 83.8% |
| 4606000 | 4252.1.1.3 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › DA_C | 0.60 | 48.0 | 4.17e-01 | 83.9% | 71.6% |
| 3461283 | 77.1.1.8 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › PF28611 | 0.58 | 39.0 | 4.70e-01 | 84.6% | 100.0% |
| 4011407 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 40.0 | 4.16e-01 | 91.6% | 77.7% |
| 5032395 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.57 | 31.0 | 3.32e-01 | 90.9% | 60.0% |
| 4234296 | 4252.1.1.7 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › Tocopherol_cycl | 0.56 | 44.0 | 4.45e-01 | 81.8% | 87.9% |
| 5064298 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.56 | 32.0 | 3.52e-01 | 90.9% | 67.8% |
| 4958221 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.56 | 41.0 | 3.33e-01 | 96.5% | 39.3% |
| 3453774 | 9.23.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin | 0.56 | 43.0 | 4.06e-01 | 79.0% | 92.3% |
| 4339977 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.56 | 49.0 | 3.62e-01 | 97.2% | 60.0% |
| 4542815 | 223.1.1.12 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 | 0.55 | 36.0 | 3.72e-01 | 91.6% | 67.1% |
| 3796321 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.55 | 45.0 | 4.48e-01 | 85.3% | 90.0% |
| 2992246 | 883.1.1.4 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › Clostridium_P47 | 0.55 | 38.0 | 3.28e-01 | 71.3% | 66.8% |
| 3386238 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.55 | 50.0 | 3.85e-01 | 100.0% | 75.3% |
| 4128674 | 4252.1.1.3 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › DA_C | 0.55 | 45.0 | 3.87e-01 | 86.0% | 94.4% |
| 3998951 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.54 | 45.0 | 4.44e-01 | 86.7% | 92.7% |
| 3216405 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.54 | 44.0 | 4.44e-01 | 85.3% | 90.3% |
| 4346133 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.54 | 40.0 | 4.07e-01 | 78.3% | 91.0% |
| 4971555 | 9.13.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3224 | 0.54 | 48.0 | 4.82e-01 | 99.3% | 97.9% |
| 3171918 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.54 | 41.0 | 4.39e-01 | 95.8% | 92.8% |
| 3288669 | 331.3.1.27 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 | 0.53 | 44.0 | 4.29e-01 | 87.4% | 91.3% |
| 3291499 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.53 | 39.0 | 3.89e-01 | 77.6% | 82.7% |
| 5047218 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.53 | 39.0 | 4.07e-01 | 100.0% | 83.0% |
| 4942135 | 9.2.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin | 0.52 | 40.0 | 4.22e-01 | 91.6% | 91.9% |
| 184900 | 6044.1.1.1 ↗ | a+b three layers › DUF1827-like › DUF1827-like › DUF1827-like › DUF1827 | 0.52 | 35.0 | 4.07e-01 | 73.4% | 96.0% |
| 5048592 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.52 | 38.0 | 3.94e-01 | 100.0% | 82.3% |
| 3273857 | 331.9.1.2 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C | 0.51 | 34.0 | 3.51e-01 | 100.0% | 69.6% |
| 1716664 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.51 | 46.0 | 3.23e-01 | 95.1% | 43.4% |
| 5051108 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.50 | 36.0 | 3.79e-01 | 100.0% | 81.5% |