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nuclear_protein_UL4

Euk-Vir

Testudinid_alphaherpesvirus_3

nuclear_protein_UL4__YP_009176936__Testudinid_alphaherpesvirus_3__2560801

Identity

Accession:
YP_009176936 ↗
Protein ID:
nuclear_protein_UL4
Kingdom:
euk

Quality

65.1 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Scutavirus› Testudinid_alphaherpesvirus_3

TaxID: 2560801

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-167
PDB
Domain cluster: rep: U79_protein__YP_009253983__Macaca_nemestrina_herpesvirus_7__1846169__D2-128
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03277.19 best Herpes_UL4 64.6 1.30e-17 97.5% 74.3%
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.68 36.0 4.58e-01 80.4% 85.0%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.68 36.0 4.57e-01 80.4% 85.0%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 33.0 4.02e-01 79.1% 72.2%
4e1sA00 2.40.160.160 Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain 0.61 46.0 4.01e-01 77.3% 92.6%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.61 36.0 4.32e-01 81.6% 87.7%
5akpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 36.0 4.04e-01 81.0% 73.6%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.61 37.0 4.46e-01 72.4% 92.5%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.60 42.0 4.18e-01 82.2% 68.9%
1gjwA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 23.0 3.37e-01 97.5% 79.4%
3b33A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 36.0 4.27e-01 79.8% 89.9%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 35.0 3.69e-01 71.8% 68.5%
6baoA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 35.0 3.71e-01 82.2% 69.9%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.56 32.0 3.94e-01 84.7% 91.9%
3aj7A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 24.0 3.32e-01 81.6% 81.8%
3vy8X00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.54 49.0 3.83e-01 97.5% 64.2%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.53 28.0 3.80e-01 97.5% 98.8%
7szeB02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.53 41.0 3.92e-01 95.1% 70.1%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.52 46.0 3.95e-01 98.2% 75.5%
3kvnA02 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.52 46.0 3.76e-01 96.9% 84.4%
2wc7A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 23.0 3.15e-01 79.1% 82.3%
2ztbA02 2.60.40.4280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 24.0 3.17e-01 82.2% 76.8%
3oh8A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 36.0 3.90e-01 92.0% 83.6%
1uokA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 24.0 3.20e-01 79.1% 85.9%
1x53A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 34.0 3.74e-01 93.3% 84.0%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 37.0 3.99e-01 92.6% 86.7%
4gklA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 26.0 3.39e-01 79.8% 89.8%
3l4rA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 35.0 3.64e-01 80.4% 76.8%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3697524 9.2.1.7 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › PF30970 0.65 35.0 4.62e-01 89.6% 94.4%
4026812 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.62 38.0 3.91e-01 96.9% 61.3%
4960625 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.60 43.0 4.18e-01 74.2% 78.9%
4960626 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.60 43.0 4.60e-01 74.2% 86.3%
2796929 223.1.1.12 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.60 37.0 4.26e-01 82.2% 84.6%
4032202 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.59 39.0 3.86e-01 81.0% 60.6%
3276714 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 32.0 3.38e-01 82.2% 57.3%
3839285 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.57 41.0 3.94e-01 73.6% 95.7%
3854099 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.56 36.0 3.67e-01 87.7% 65.8%
5069528 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.55 35.0 4.16e-01 84.7% 94.5%
3342595 9.23.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin 0.55 39.0 3.88e-01 72.4% 90.2%
3453774 9.23.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin 0.55 39.0 3.88e-01 71.8% 91.7%
5051779 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.55 34.0 4.07e-01 94.5% 91.8%
3730429 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.55 38.0 4.17e-01 73.6% 86.7%
2130817 881.1.1.2 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1 0.53 35.0 3.41e-01 84.0% 58.1%
4042627 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.53 42.0 4.25e-01 84.7% 92.9%
3967111 3338.2.1.2 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin 0.52 35.0 4.03e-01 90.2% 90.4%
3946752 5084.5.3.10 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TamB, PF27051 0.52 46.0 3.49e-01 94.5% 52.1%
3709836 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.52 33.0 3.13e-01 82.2% 52.3%
4011406 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 35.0 3.62e-01 83.4% 71.6%
4086531 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.51 38.0 2.78e-01 75.5% 83.6%
5040016 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.51 39.0 4.05e-01 96.9% 84.5%
3998951 3523.1.1.0 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.51 38.0 3.98e-01 77.3% 93.3%
4606000 4252.1.1.3 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DA_C 0.50 42.0 3.81e-01 87.7% 93.5%
3838829 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.50 41.0 3.98e-01 88.3% 93.0%