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nuclear_protein_UL4

Euk-Vir

Suid_alphaherpesvirus_1

nuclear_protein_UL4__YP_068372__Suid_alphaherpesvirus_1__10345

Identity

Accession:
YP_068372 ↗
Protein ID:
nuclear_protein_UL4
Kingdom:
euk

Quality

82.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-141
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03277.19 best Herpes_UL4 86.8 2.20e-24 98.6% 73.8%
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.71 43.0 4.82e-01 92.1% 75.7%
2jpiA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.71 33.0 3.98e-01 92.1% 64.6%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.66 41.0 4.72e-01 92.1% 85.0%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.66 40.0 4.71e-01 92.1% 85.0%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.65 45.0 4.38e-01 99.3% 64.2%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.65 43.0 4.31e-01 98.6% 63.9%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.65 46.0 4.31e-01 97.8% 59.4%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.64 42.0 4.74e-01 80.6% 85.8%
4lrzE02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 42.0 4.98e-01 92.8% 97.9%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.64 39.0 4.51e-01 79.1% 85.0%
2mj7A00 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.63 35.0 3.57e-01 93.5% 53.2%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.62 31.0 4.31e-01 91.4% 98.5%
3fg8A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 42.0 4.76e-01 95.0% 91.5%
1d1jB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.61 44.0 4.52e-01 95.0% 76.5%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.61 46.0 4.41e-01 97.1% 67.1%
2yh6D00 3.30.530.50 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.60 37.0 4.14e-01 94.2% 77.3%
6g1yA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 38.0 4.10e-01 90.6% 73.3%
3b33A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 41.0 4.49e-01 92.1% 89.9%
3rbyA02 2.40.128.310 Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, C-terminal domain 0.59 35.0 4.13e-01 74.8% 85.3%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 42.0 4.10e-01 84.2% 65.6%
5akpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 39.0 4.09e-01 92.8% 73.6%
5hsqA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 37.0 3.87e-01 95.7% 68.2%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 41.0 4.22e-01 92.8% 74.8%
3nhqA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 37.0 3.95e-01 90.6% 73.1%
1x53A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 41.0 4.23e-01 92.1% 77.9%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 40.0 4.00e-01 78.4% 69.2%
1ew3A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 41.0 3.97e-01 84.2% 66.0%
3l4rA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 41.0 4.08e-01 84.9% 71.5%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 39.0 4.13e-01 93.5% 80.3%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 41.0 4.19e-01 77.7% 90.4%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.55 33.0 3.61e-01 97.1% 71.1%
2m89A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 40.0 4.10e-01 92.1% 77.6%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.54 47.0 3.79e-01 93.5% 94.8%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 41.0 4.33e-01 81.3% 92.0%
3pu2B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 41.0 4.03e-01 92.1% 73.9%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.53 34.0 3.82e-01 79.9% 88.9%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 36.0 3.71e-01 92.8% 72.4%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.53 39.0 3.80e-01 77.0% 75.0%
3i3lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 42.0 2.99e-01 85.6% 90.6%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.52 39.0 3.88e-01 80.6% 89.2%
3oh8A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 39.0 3.95e-01 100.0% 80.0%
3eliA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 40.0 4.02e-01 92.1% 81.2%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3624850 331.9.1.9 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF26171 0.74 37.0 4.23e-01 92.1% 63.8%
3536489 331.9.1.5 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP4E_app_platf 0.69 37.0 4.15e-01 92.1% 66.7%
4974736 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.68 44.0 4.42e-01 99.3% 63.4%
4941093 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.66 45.0 4.38e-01 97.8% 63.3%
5048999 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.66 38.0 3.80e-01 92.1% 55.0%
3601966 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.66 37.0 4.10e-01 92.1% 67.0%
150440 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.65 46.0 4.36e-01 97.8% 61.2%
4941591 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.65 43.0 4.28e-01 98.6% 63.4%
5058112 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.64 44.0 4.36e-01 98.6% 65.5%
4059480 881.1.1.37 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF27270 0.64 43.0 4.00e-01 97.8% 54.9%
4928436 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.63 43.0 4.28e-01 97.8% 66.2%
4114942 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.63 48.0 4.52e-01 80.6% 65.7%
3785038 9.13.1.4 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 0.62 53.0 4.91e-01 92.1% 92.6%
5043414 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.61 48.0 4.89e-01 81.3% 93.3%
2796929 223.1.1.12 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.61 42.0 4.58e-01 95.7% 84.6%
4010124 5084.5.2.6 beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › YhdP 0.61 45.0 3.41e-01 77.0% 48.4%
3280174 223.5.1.0 a+b three layers › Profilin-like › YNR034W-A-like › YNR034W-A-like 0.60 37.0 4.56e-01 97.8% 98.8%
4973777 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.60 43.0 4.20e-01 97.8% 66.7%
3707715 331.18.1.0 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.60 40.0 3.87e-01 92.8% 60.0%
4974879 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.60 44.0 4.13e-01 98.6% 63.0%
1790181 331.22.1.2 a+b two layers › TBP-like › Outer membrane protein assembly factor BamC › Outer membrane protein assembly factor BamC › PF29358 0.60 38.0 3.40e-01 95.0% 44.0%
3739823 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.59 38.0 4.00e-01 92.8% 71.2%
4929322 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.59 36.0 4.22e-01 95.7% 85.0%
4974235 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.59 42.0 3.96e-01 97.8% 61.8%
4032202 4237.1.1.1 beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.59 46.0 4.31e-01 95.7% 66.9%
3937762 3523.1.1.0 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.58 43.0 3.79e-01 77.0% 66.3%
4882206 223.1.1.12 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.58 39.0 4.21e-01 100.0% 79.3%
3630050 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.58 42.0 4.02e-01 92.1% 65.8%
3991097 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 38.0 3.98e-01 77.7% 72.8%
3236743 3523.1.1.0 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.58 43.0 3.80e-01 76.3% 65.2%
3982863 5084.5.1.22 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DUF3971 0.58 47.0 3.29e-01 92.1% 27.9%
4973410 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.58 42.0 4.06e-01 99.3% 65.6%
5060754 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 34.0 3.67e-01 89.9% 68.7%
5014159 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.57 40.0 4.20e-01 93.5% 79.2%
5014493 331.3.1.12 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › STK_08120-like 0.57 40.0 3.37e-01 94.2% 43.5%
3347865 220.1.1.78 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.57 35.0 3.76e-01 86.3% 70.0%
5035188 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.57 40.0 4.25e-01 81.3% 84.7%
3932316 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.57 41.0 4.24e-01 92.1% 79.2%
3453774 9.23.1.4 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin 0.57 45.0 4.20e-01 83.5% 91.1%
3171918 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 41.0 4.35e-01 93.5% 84.8%
3342595 9.23.1.4 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin 0.56 46.0 4.25e-01 86.3% 86.7%
4887870 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.56 40.0 3.84e-01 82.0% 63.0%
4942135 9.2.1.0 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.55 41.0 4.27e-01 81.3% 85.5%
5033173 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.55 38.0 4.15e-01 79.1% 89.0%
3839690 5084.1.1.15 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.55 43.0 3.84e-01 82.7% 94.9%
3449040 9.1.1.34 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PAP_fibrillin 0.55 43.0 4.06e-01 84.9% 84.6%
3575626 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.54 39.0 3.75e-01 98.6% 65.0%
3796321 3523.1.1.0 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.54 45.0 4.39e-01 87.8% 91.3%
3828471 9.23.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.54 40.0 4.08e-01 77.7% 80.6%
5047218 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.54 39.0 4.02e-01 91.4% 77.8%
3978563 881.1.1.18 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF2167 0.53 41.0 3.51e-01 97.8% 50.2%
3339690 9.23.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.53 39.0 3.97e-01 76.3% 85.2%
3898360 3523.1.1.0 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.53 32.0 3.48e-01 71.9% 72.7%
3998951 3523.1.1.0 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.52 44.0 4.35e-01 89.2% 94.0%
3946752 5084.5.3.10 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TamB, PF27051 0.52 44.0 3.27e-01 92.1% 38.9%
5025577 331.3.1.7 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.51 40.0 4.01e-01 93.5% 78.6%