←Back to structures
nuclear_protein_UL55
Euk-VirColumbid_alphaherpesvirus_1
nuclear_protein_UL55__YP_009352967__Columbid_alphaherpesvirus_1__93386
Identity
- Accession:
- YP_009352967 ↗
- Protein ID:
- nuclear_protein_UL55
- Kingdom:
- euk
Quality
76.3
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Mardivirus›
Columbid_alphaherpesvirus_1
TaxID: 93386
Cluster
View cluster (27 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-177
Domain cluster:
rep: nuclear_protein_UL55__YP_009361883__Ateline_alphaherpesvirus_1__35243__D11-195
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04537.18 best | Herpes_UL55 | 118.2 | 5.20e-34 | 96.2% | 92.1% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7zvsB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.59 | 30.0 | 3.57e-01 | 84.1% | 71.7% |
| 5icuA00 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 33.0 | 3.99e-01 | 94.3% | 84.3% |
| 2plgA01 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.56 | 36.0 | 3.86e-01 | 95.5% | 74.2% |
| 1fm4A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 38.0 | 3.84e-01 | 70.7% | 98.7% |
| 2il5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 39.0 | 3.87e-01 | 72.0% | 100.0% |
| 3lkmA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 40.0 | 4.02e-01 | 86.6% | 79.0% |
| 3e8pA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 30.0 | 3.04e-01 | 98.7% | 56.2% |
| 2c4iA01 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.52 | 27.0 | 3.07e-01 | 73.9% | 64.4% |
| 4kh9B02 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.51 | 31.0 | 3.60e-01 | 96.8% | 83.2% |
| 2pmqA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.50 | 28.0 | 3.09e-01 | 96.2% | 64.3% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3457175 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.60 | 29.0 | 2.47e-01 | 90.4% | 26.9% |
| 4101946 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.58 | 41.0 | 4.03e-01 | 71.3% | 97.6% |
| 3794870 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.56 | 38.0 | 3.79e-01 | 90.4% | 65.6% |
| 3175912 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.54 | 42.0 | 3.92e-01 | 83.4% | 91.5% |
| 3183987 | 331.3.1.30 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF3074 | 0.52 | 43.0 | 3.46e-01 | 89.2% | 100.0% |
| 4526286 | 331.3.1.19 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VanA_C | 0.52 | 43.0 | 3.79e-01 | 87.3% | 83.5% |
| 3296756 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 28.0 | 3.25e-01 | 92.4% | 72.7% |
| 3959045 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.51 | 38.0 | 4.23e-01 | 94.9% | 100.0% |
| 4456367 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.51 | 39.0 | 4.27e-01 | 85.4% | 100.0% |
| 3735123 | 331.3.1.30 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF3074 | 0.51 | 42.0 | 3.55e-01 | 91.1% | 98.9% |
| 3289660 | 305.1.1.3 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › DUF3000 | 0.51 | 37.0 | 4.16e-01 | 94.9% | 99.2% |
| 3704543 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.50 | 41.0 | 3.52e-01 | 89.2% | 91.3% |
| 3927497 | 2484.5.1.3 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 | 0.50 | 25.0 | 3.25e-01 | 93.0% | 88.7% |