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nuclear_protein_ul4

Euk-Vir

Leporid_alphaherpesvirus_4

nuclear_protein_ul4__YP_009230134__Leporid_alphaherpesvirus_4__481315

Identity

Accession:
YP_009230134 ↗
Protein ID:
nuclear_protein_ul4
Kingdom:
euk

Quality

74.2 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Simplexvirus› Leporid_alphaherpesvirus_4

TaxID: 481315

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-138
PDB
Domain cluster: rep: U79_protein__YP_009253983__Macaca_nemestrina_herpesvirus_7__1846169__D2-128
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03277.19 best Herpes_UL4 131.4 4.50e-38 99.3% 71.7%
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.71 44.0 5.08e-01 99.3% 85.0%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.70 44.0 5.06e-01 99.3% 85.0%
4qwoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.65 46.0 4.65e-01 100.0% 72.7%
2yh6D00 3.30.530.50 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.63 36.0 4.01e-01 99.3% 70.0%
4lrzE02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 42.0 4.91e-01 100.0% 97.9%
3b33A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 43.0 4.71e-01 98.5% 89.9%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.60 41.0 4.53e-01 89.6% 87.7%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.60 41.0 4.47e-01 90.4% 87.2%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.59 48.0 4.47e-01 86.7% 70.7%
5akpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 41.0 4.19e-01 100.0% 75.2%
2ichA02 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.58 47.0 4.81e-01 92.6% 90.0%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 41.0 4.30e-01 97.8% 78.7%
2f1vA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.57 45.0 4.11e-01 84.4% 80.8%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 41.0 4.11e-01 100.0% 73.3%
4by2B00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.56 39.0 3.76e-01 83.0% 61.9%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.56 48.0 4.40e-01 93.3% 87.2%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.56 39.0 4.26e-01 88.9% 91.5%
1k5dB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 3.96e-01 78.5% 68.5%
1lf6A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 42.0 3.38e-01 80.7% 90.1%
3kvnA02 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.55 48.0 3.74e-01 96.3% 91.6%
1uynX00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.55 49.0 3.89e-01 97.8% 89.2%
6qwrA01 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.55 45.0 4.14e-01 92.6% 89.9%
1x53A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 40.0 4.11e-01 100.0% 78.6%
2hzmA02 2.20.140.20 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › 0.53 31.0 3.82e-01 78.5% 92.9%
3kmuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 32.0 3.89e-01 95.6% 94.3%
1kmoA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.52 46.0 3.05e-01 94.1% 44.9%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 4.29e-01 88.1% 87.7%
2qziA00 3.40.1720.10 Alpha Beta › 3-Layer(aba) Sandwich › Streptococcus thermophilus LMG 18311 protein like › Streptococcus thermophilus LMG 18311 protein like 0.52 37.0 4.23e-01 80.7% 97.0%
4e2oA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 29.0 3.41e-01 85.2% 79.5%
1lshA01 2.30.230.10 Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A 0.52 42.0 3.36e-01 86.7% 78.7%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.51 46.0 3.67e-01 97.8% 91.4%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.51 32.0 3.91e-01 100.0% 100.0%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 40.0 4.19e-01 88.9% 91.2%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 41.0 4.17e-01 87.4% 88.0%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 41.0 3.99e-01 100.0% 79.2%
2w16A03 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.50 44.0 2.90e-01 94.1% 43.5%
3l4rA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 41.0 4.02e-01 100.0% 80.1%
3bvxA04 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.50 38.0 3.03e-01 80.0% 87.9%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 40.0 4.11e-01 89.6% 90.7%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3697524 9.2.1.7 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › PF30970 0.67 41.0 4.88e-01 77.8% 91.1%
3785038 9.13.1.4 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 0.65 58.0 5.38e-01 100.0% 93.7%
4541227 9.13.1.4 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 0.63 57.0 5.24e-01 100.0% 95.4%
3280174 223.5.1.0 ↗ a+b three layers › Profilin-like › YNR034W-A-like › YNR034W-A-like 0.62 38.0 4.62e-01 98.5% 95.3%
1790181 331.22.1.2 ↗ a+b two layers › TBP-like › Outer membrane protein assembly factor BamC › Outer membrane protein assembly factor BamC › PF29358 0.62 37.0 3.26e-01 100.0% 40.0%
3733645 9.13.1.4 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 0.62 55.0 5.34e-01 100.0% 94.2%
5043414 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.61 52.0 5.28e-01 89.6% 94.8%
4044601 9.13.1.4 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 0.60 51.0 5.23e-01 100.0% 98.4%
2796929 223.1.1.12 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.60 42.0 4.49e-01 100.0% 83.8%
4212192 4252.1.1.3 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DA_C 0.60 51.0 4.37e-01 91.1% 73.8%
858 9.3.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Qn_am_d_aII 0.60 41.0 4.33e-01 90.4% 79.8%
4114942 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.59 46.0 4.23e-01 83.7% 62.9%
5060754 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 41.0 4.40e-01 97.0% 82.6%
3991097 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 40.0 4.15e-01 87.4% 73.6%
4606000 4252.1.1.3 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DA_C 0.59 50.0 4.29e-01 91.1% 73.5%
5033778 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.58 41.0 4.38e-01 91.9% 85.0%
4946526 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.58 49.0 3.79e-01 88.9% 98.2%
3190914 12.3.1.12 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_transf_36 0.58 44.0 3.27e-01 77.8% 90.0%
1933307 9.13.1.5 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › AOC_like 0.58 48.0 5.04e-01 100.0% 100.0%
5032631 5084.3.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter 0.58 48.0 4.05e-01 93.3% 92.2%
4010124 5084.5.2.6 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › YhdP 0.57 46.0 3.44e-01 83.7% 48.4%
4942438 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.57 49.0 4.40e-01 93.3% 85.8%
3982863 5084.5.1.22 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DUF3971 0.57 48.0 3.37e-01 100.0% 28.6%
4128674 4252.1.1.3 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DA_C 0.56 48.0 4.14e-01 93.3% 78.6%
3967111 3338.2.1.2 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin 0.56 44.0 4.60e-01 81.5% 90.4%
1063578 9.2.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin 0.56 39.0 4.26e-01 88.9% 91.5%
3937762 3523.1.1.0 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.56 45.0 3.87e-01 83.7% 66.3%
3630050 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.56 41.0 3.94e-01 100.0% 66.5%
4958461 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 32.0 3.83e-01 75.6% 84.4%
3847303 5084.5.1.67 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Hobbit 0.56 41.0 3.61e-01 75.6% 72.6%
4361209 7026.1.1.13 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › Hobbit 0.55 41.0 3.57e-01 75.6% 67.0%
4234296 4252.1.1.7 ↗ beta barrels › AttH-like › AttH-like › AttH-like › Tocopherol_cycl 0.55 46.0 4.62e-01 91.9% 88.6%
4032202 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.55 47.0 4.33e-01 93.3% 90.9%
4331617 5084.1.1.5 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OmpW 0.55 46.0 4.16e-01 92.6% 91.4%
3627058 7026.1.1.0 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 0.54 39.0 3.45e-01 74.8% 78.0%
3796321 3523.1.1.0 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.54 48.0 4.68e-01 94.1% 90.7%
3453774 9.23.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin 0.54 45.0 4.19e-01 88.9% 92.9%
3342595 9.23.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin 0.53 45.0 4.15e-01 90.4% 90.2%
4956163 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.53 41.0 3.70e-01 80.0% 83.9%
3245642 7026.1.1.0 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 0.53 39.0 3.30e-01 75.6% 70.9%
2324076 883.1.1.4 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › Clostridium_P47 0.53 40.0 3.53e-01 80.7% 68.1%
3998951 3523.1.1.0 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.53 48.0 4.65e-01 96.3% 94.0%
4019659 220.1.1.213 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7614 0.53 43.0 3.91e-01 86.7% 88.3%
3071075 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.53 48.0 3.64e-01 100.0% 88.5%
4014784 9.14.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 0.52 35.0 4.04e-01 80.7% 93.9%
184900 6044.1.1.1 ↗ a+b three layers › DUF1827-like › DUF1827-like › DUF1827-like › DUF1827 0.52 37.0 4.23e-01 80.7% 97.0%
5015520 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.51 42.0 3.62e-01 86.7% 82.4%
3241230 5087.1.1.0 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 0.51 45.0 3.77e-01 93.3% 98.6%
4942135 9.2.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.51 38.0 3.93e-01 92.6% 87.1%
3925087 7026.1.1.0 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 0.50 37.0 3.03e-01 75.6% 65.3%
3716267 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.50 47.0 3.46e-01 100.0% 87.8%