nucleic_acid_binding_protein

Euk-Vir

Garlic_virus_E

nucleic_acid_binding_protein__NP_659017__Garlic_virus_E__150285

Identity

83.7 mean pLDDT

Orthornavirae› Kitrinoviricota› Alsuviricetes› Tymovirales› Alphaflexiviridae› Allexivirus› Garlic_virus_E

TaxID: 150285

View cluster (5 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 51-125

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05515.17 best	Viral_NABP	95.2	8.50e-27	97.3%	33.9%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5xn6D00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.55	48.0	3.33e-01	100.0%	53.4%
2izvA00	3.30.505.10	Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain	0.52	42.0	3.39e-01	93.3%	94.5%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4536378	3016.1.1.10 ↗	a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P	0.57	40.0	3.91e-01	74.7%	67.5%
3986599	109.2.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid	0.56	40.0	2.81e-01	77.3%	52.0%
4972168	7073.1.1.1 ↗	alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › Malic_M	0.51	36.0	3.28e-01	78.7%	58.3%
3954068	633.23.1.7 ↗	alpha bundles › Bromodomain-like › Claudin › Claudin › DUF5336	0.50	40.0	3.47e-01	89.3%	85.6%