nucleic_acid_binding_protein

Euk-Vir

Melon_yellowing-associated_virus

nucleic_acid_binding_protein__YP_009505631__Melon_yellowing-associated_virus__255255

Identity

74.2 mean pLDDT

Orthornavirae› Kitrinoviricota› Alsuviricetes› Tymovirales› Betaflexiviridae› Carlavirus› Melon_yellowing-associated_virus

TaxID: 255255

View cluster (5 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 48-130

PDB

Domain cluster: rep: nucleic_acid_binding_protein__NP_659017__Garlic_virus_E__150285__D51-125

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05515.17 best	Viral_NABP	31.7	2.20e-07	94.0%	34.4%
PF01623.24	Carla_C4	28.0	2.90e-06	56.6%	55.9%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5douA01	1.10.1030.10	Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain	0.55	38.0	3.06e-01	72.3%	72.5%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4637	109.16.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › TROVE domain-like › TROVE domain-like › TROVE	0.59	45.0	3.03e-01	84.3%	22.0%
60152	109.16.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › TROVE domain-like › TROVE domain-like	0.58	46.0	3.04e-01	85.5%	20.6%
4018032	174.1.1.18 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Erv26	0.55	43.0	3.53e-01	86.7%	76.9%
3406826	192.10.1.0 ↗	alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain	0.53	40.0	3.83e-01	100.0%	68.0%
4150052	3054.1.1.0 ↗	alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol	0.50	40.0	3.69e-01	100.0%	65.8%