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nucleocapsid,_partial
Euk-VirSierra_Nevada_virus
nucleocapsid,_partial__YP_009044206__Sierra_Nevada_virus__1424280
Identity
- Accession:
- YP_009044206 ↗
- Protein ID:
- nucleocapsid,_partial
- Kingdom:
- euk
Quality
71.2
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Nyamiviridae›
Nyavirus›
Sierra_Nevada_virus
TaxID: 1424280
Cluster
View cluster (23 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-195
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2y1eA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.66 | 24.0 | 3.30e-01 | 84.6% | 62.1% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.59 | 29.0 | 3.84e-01 | 81.1% | 85.6% |
| 2gttC01 | 1.10.3570.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain | 0.58 | 53.0 | 5.07e-01 | 100.0% | 94.8% |
| 1guxB00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 36.0 | 3.90e-01 | 75.7% | 73.8% |
| 4lqkA00 | 1.10.437.20 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus | 0.52 | 30.0 | 3.37e-01 | 93.5% | 71.2% |
| 4mcwA02 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.50 | 38.0 | 3.64e-01 | 77.5% | 86.5% |
| 4gzcA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.50 | 33.0 | 3.69e-01 | 100.0% | 84.8% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1763953 | 566.1.1.3 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Pneumo_ncap | 0.65 | 59.0 | 4.61e-01 | 100.0% | 53.4% |
| 4364892 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.54 | 47.0 | 3.96e-01 | 93.5% | 84.6% |
D2
high
residues 200-339
Domain cluster:
rep: N__YP_009508485__Southwest_carpet_python_virus__2016402__D213-328
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06407.16 best | BDV_P40 | 45.7 | 6.10e-12 | 92.1% | 33.8% |