←Back to structures

nucleocapsid_N

Euk-Vir

American_bat_vesiculovirus_TFFN-2013

nucleocapsid_N__YP_008767239__American_bat_vesiculovirus_TFFN-2013__1344113

Identity

Accession:: YP_008767239 ↗
Protein ID:: nucleocapsid_N
Kingdom:: euk

Quality

91.7 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Vesiculovirus› American_bat_vesiculovirus

TaxID: 1344113

Cluster

View cluster (144 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 236-343_369-423

PDB

Domain cluster: rep: nucleoprotein__YP_009094365__Almpiwar_virus__318843__D225-426

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	116.3	2.30e-33	66.9%	25.6%

D2 medium residues 38-115

PDB

Domain cluster: rep: nucleoprotein__YP_010229214__Almendravirus_balsa__1972684__D37-133

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	57.9	1.30e-15	100.0%	16.3%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3hhwK01	1.10.3570.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain	0.95	90.0	6.55e-01	100.0%	42.1%
2gttC01	1.10.3570.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain	0.84	76.0	5.59e-01	100.0%	40.2%
1g5hB02	3.40.50.800	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain	0.61	34.0	3.06e-01	93.6%	39.3%
5deqB02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.58	23.0	2.27e-01	71.8%	30.1%
2iylD01	1.20.120.140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain	0.57	26.0	2.90e-01	88.5%	52.3%
3ckyA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.50	41.0	3.40e-01	87.2%	84.3%

ECOD (25)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2966640	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.95	91.0	5.54e-01	100.0%	19.5%
2992377	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.88	82.0	5.14e-01	100.0%	21.1%
4846751	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.88	81.0	5.39e-01	100.0%	28.3%
3442448	109.4.1.1272 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif	0.69	48.0	2.86e-01	73.1%	23.5%
3304690	109.4.1.1335 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, E_motif	0.67	47.0	3.10e-01	75.6%	39.8%
3680630	109.4.1.1860 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, Eplus_motif, E_motif	0.64	46.0	3.09e-01	75.6%	45.1%
3803650	109.4.1.1335 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, E_motif	0.64	45.0	2.70e-01	74.4%	22.8%
3808015	109.4.1.1254 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif	0.64	44.0	3.23e-01	71.8%	63.2%
3809045	109.4.1.1272 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif	0.63	46.0	3.07e-01	76.9%	44.1%
3419693	109.4.1.1254 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif	0.62	43.0	3.29e-01	73.1%	71.8%
3828334	109.4.1.1254 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif	0.62	42.0	2.89e-01	71.8%	45.3%
3464775	109.4.1.1254 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif	0.61	44.0	2.88e-01	75.6%	49.7%
3367891	109.4.1.1272 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif	0.61	43.0	2.91e-01	74.4%	43.4%
2774009	109.4.1.1300 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_16, TPR_19	0.60	37.0	3.93e-01	73.1%	69.0%
3362072	109.4.1.1254 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif	0.60	43.0	2.95e-01	76.9%	56.3%
3301231	109.4.1.1272 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif	0.58	42.0	2.74e-01	78.2%	49.0%
3360215	109.4.1.1254 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif	0.58	41.0	3.13e-01	75.6%	58.3%
3654408	109.4.1.1254 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif	0.57	41.0	2.89e-01	75.6%	52.0%
3807989	109.4.1.2070 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2, E_motif	0.57	41.0	2.60e-01	76.9%	37.0%
4860	626.1.1.1 ↗	alpha complex topology › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › FH2	0.55	37.0	3.20e-01	93.6%	41.7%
3232336	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.54	42.0	2.78e-01	85.9%	22.9%
3379597	149.1.1.1 ↗	alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450	0.53	40.0	2.75e-01	83.3%	31.1%
3346465	109.4.1.1371 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, Eplus_motif, E_motif	0.51	42.0	2.57e-01	88.5%	25.2%
3373809	109.4.1.1269 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif	0.51	38.0	2.95e-01	76.9%	43.2%
3677029	109.4.1.1985 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, Eplus_motif, E_motif	0.51	40.0	2.86e-01	89.7%	86.0%

D3 medium residues 116-235

PDB

Domain cluster: rep: nucleocapsid_protein__YP_009094340__Scophthalmus_maximus_rhabdovirus__936149__D129-226_273-284

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	133.4	1.50e-38	100.0%	28.8%