nucleocapsid

Euk-Vir

Perhabdovirus_perca

nucleocapsid__YP_007641363__Perhabdovirus_perca__1256869

Identity

86.8 mean pLDDT

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Perhabdovirus› Perhabdovirus_perca

TaxID: 1256869

View cluster (144 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-221

PDB

Domain cluster: rep: nucleocapsid_protein__YP_008686596__Drosophila_obscura_sigmavirus_10A__666962__D36-146_214-247

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	88.9	4.70e-25	97.8%	41.5%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3hhwK01	1.10.3570.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain	0.91	87.0	8.80e-01	99.5%	100.0%
2gttC01	1.10.3570.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain	0.89	85.0	8.32e-01	99.5%	99.5%
4ezbA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.52	26.0	3.16e-01	77.7%	72.6%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2966640	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.91	88.0	6.55e-01	100.0%	46.0%
2992377	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.89	86.0	6.60e-01	100.0%	52.6%
4846751	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.89	86.0	7.28e-01	100.0%	70.3%
3719809	592.1.1.0 ↗	alpha arrays › PWI domain-like › PWI domain › PWI domain	0.60	29.0	3.80e-01	73.4%	83.0%
3833909	633.4.1.1 ↗	alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI	0.53	32.0	3.66e-01	89.1%	78.3%
3185107	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.50	21.0	3.22e-01	83.7%	98.6%
4021549	109.4.1.547 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Clr5	0.50	31.0	2.42e-01	94.6%	27.3%

D2 medium residues 225-326

PDB

Domain cluster: rep: nucleocapsid__YP_009302014__Wuhan_Louse_Fly_Virus_10__1608114__D226-319_345-374

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	123.7	1.30e-35	100.0%	24.1%

D3 medium residues 327-343_371-426

PDB

Domain cluster: rep: nucleoprotein__YP_009362111__Marco_virus__1158190__D382-436

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gttJ02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.77	66.0	4.88e-01	95.9%	45.3%
1q2lA02	3.30.830.10	Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like	0.59	49.0	3.60e-01	98.6%	61.5%
1ny9A00	1.10.490.50	Mainly Alpha › Orthogonal Bundle › Globin-like › Antibiotic binding domain of TipA-like multidrug resistance regulators	0.55	43.0	4.01e-01	100.0%	67.0%
7wf8B01	1.10.167.10	Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2	0.50	39.0	3.42e-01	87.7%	95.9%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2966640	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.87	80.0	4.88e-01	98.6%	20.0%
3493452	108.1.1.73 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7	0.66	34.0	3.01e-01	75.3%	34.3%
3803972	130.1.1.0 ↗	alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif	0.56	32.0	3.25e-01	71.2%	55.7%
3250179	4019.1.1.4 ↗	alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Peptidase_S13	0.54	45.0	4.23e-01	97.3%	90.5%
3805676	1128.1.1.13 ↗	alpha bundles › LYR protein › LYR protein › LYR protein › PF30094	0.51	41.0	3.85e-01	90.4%	81.1%