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nucleocapsid

Euk-Vir

Long_Island_tick_rhabdovirus

nucleocapsid__YP_009094013__Long_Island_tick_rhabdovirus__1459044

Identity

Accession:
YP_009094013 ↗
Protein ID:
nucleocapsid
Kingdom:
euk

Quality

71.8 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Sawgrhavirus› Long_Island_tick_rhabdovirus

TaxID: 1459044

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 33-130
PDB
Domain cluster: rep: nucleoprotein__YP_010229214__Almendravirus_balsa__1972684__D37-133
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hhwK01 1.10.3570.10 Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain 0.78 66.0 5.29e-01 90.8% 48.1%
2gf2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.54 37.0 3.33e-01 71.4% 79.9%
3ckyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.52 35.0 3.18e-01 70.4% 82.8%
2plrA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 37.0 2.91e-01 75.5% 77.4%
1j09A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.51 24.0 3.10e-01 82.7% 85.4%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2966640 566.2.1.1 ↗ alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap 0.80 73.0 4.74e-01 100.0% 24.0%
4846751 566.2.1.1 ↗ alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap 0.77 69.0 4.96e-01 100.0% 35.1%
2992377 566.2.1.1 ↗ alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap 0.76 69.0 4.60e-01 100.0% 27.1%
5069454 2004.1.1.79 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.54 39.0 3.15e-01 76.5% 84.8%
5033182 2004.1.1.79 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.54 39.0 3.16e-01 76.5% 86.1%
4081270 7581.1.1.3 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ketoacyl-synt,Ketoacyl-synt_C 0.54 42.0 2.57e-01 85.7% 58.3%
5009778 2004.1.1.79 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.50 37.0 2.92e-01 76.5% 84.8%
D2 medium residues 131-234
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hhwK01 1.10.3570.10 Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain 0.81 71.0 5.73e-01 95.2% 52.5%
2qytA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.55 47.0 4.81e-01 98.1% 100.0%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.55 36.0 3.86e-01 90.4% 77.3%
3r2kA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 45.0 4.10e-01 97.1% 83.8%
5iduA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.51 36.0 3.45e-01 71.2% 74.2%
2pbiA02 1.10.1240.60 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.51 39.0 3.97e-01 81.7% 88.1%
4irnA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.51 35.0 3.43e-01 71.2% 73.1%
3m6jA01 1.20.1260.40 Mainly Alpha › Up-down Bundle › Ferritin › 0.51 42.0 4.14e-01 96.2% 94.0%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4075945 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.64 44.0 4.00e-01 71.2% 88.3%
3597185 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 46.0 4.92e-01 77.9% 97.7%
4434935 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.61 43.0 3.91e-01 72.1% 84.3%
5026525 633.7.1.0 ↗ alpha bundles › Bromodomain-like › Bacillus cereus metalloprotein-like › Bacillus cereus metalloprotein-like 0.57 39.0 4.06e-01 98.1% 75.5%
4932678 3457.1.1.1 ↗ alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 0.53 36.0 3.15e-01 93.3% 45.8%
3282223 633.22.1.0 ↗ alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) 0.51 36.0 3.58e-01 73.1% 90.9%
3924177 109.4.1.1157 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_WDR11 0.51 38.0 2.85e-01 77.9% 37.4%
D3 medium residues 235-352
PDB
D4 medium residues 407-470
PDB