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nucleocapsid

Euk-Vir

Sunshine_Coast_virus

nucleocapsid__YP_009094046__Sunshine_Coast_virus__1195087

Identity

Accession:: YP_009094046 ↗
Protein ID:: nucleocapsid
Kingdom:: euk

Quality

57.1 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Sunviridae› Sunshinevirus› Sunshine_Coast_virus

TaxID: 1195087

Cluster

View cluster (62 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 251-377_402-412

PDB

Domain cluster: rep: nucleocapsid_protein__NP_054707__Mumps_orthorubulavirus__2560602__D281-403

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00973.26 best	Paramyxo_ncap	90.4	1.60e-25	97.1%	31.0%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gttJ02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.71	58.0	5.22e-01	87.7%	72.1%
2gicD02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.69	59.0	5.21e-01	90.6%	71.3%
1n93X02	1.10.3050.10	Mainly Alpha › Orthogonal Bundle › borna disease virus nucleoprotein, domain 2 › borna disease virus nucleoprotein, domain 2	0.68	55.0	5.71e-01	84.8%	99.2%
3t5vA00	1.25.40.990	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.56	40.0	3.15e-01	72.5%	87.0%
2a9uA01	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.56	34.0	3.57e-01	86.2%	65.9%
5c4yA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.55	33.0	3.38e-01	91.3%	59.6%
5nohA00	1.20.120.1350	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain	0.55	32.0	3.59e-01	73.9%	74.8%
1ihuA02	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.51	43.0	3.45e-01	92.8%	91.7%
2v5cA03	1.20.58.460	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like	0.50	32.0	3.38e-01	86.2%	69.2%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2749214	566.1.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap	0.86	71.0	4.94e-01	85.5%	31.2%
2769765	566.1.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap	0.83	73.0	5.08e-01	92.0%	32.9%
2996711	566.1.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap	0.82	72.0	5.00e-01	92.0%	33.0%
2756727	566.1.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap	0.82	72.0	5.03e-01	92.0%	32.5%
2521251	566.1.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap	0.80	70.0	4.94e-01	92.0%	34.0%
2476746	566.1.1.4 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Ebola_NP	0.79	69.0	4.91e-01	92.0%	36.1%
2522010	566.1.1.0 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related	0.79	61.0	4.37e-01	79.7%	30.7%
1763953	566.1.1.3 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Pneumo_ncap	0.78	64.0	4.61e-01	86.2%	34.1%
3719307	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.63	28.0	2.51e-01	78.3%	28.5%
3498882	180.1.1.1 ↗	alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2	0.55	45.0	3.90e-01	86.2%	91.7%
4129436	4006.1.1.1 ↗	alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF	0.53	31.0	3.49e-01	79.0%	74.3%
5040620	1075.1.2.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX	0.53	44.0	3.71e-01	87.7%	80.5%
3805085	611.8.1.0 ↗	alpha bundles › N-cbl like › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › C-terminal domain of E3 ubiquitin-protein ligase ARIH1	0.51	31.0	3.07e-01	70.3%	53.5%
3958593	5043.2.1.0 ↗	extended segments › Sensor proteins transmembrane domains › NarQ transmembrane domain › NarQ transmembrane domain	0.51	34.0	3.64e-01	92.0%	78.3%
3419594	611.8.1.3 ↗	alpha bundles › N-cbl like › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › DUF7378	0.50	31.0	3.06e-01	73.2%	54.7%

D2 medium residues 43-110

PDB

D3 medium residues 140-250

PDB

Domain cluster: rep: nucleocapsid_protein__YP_009512957__Feline_morbillivirus__1170234__D152-264

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00973.26 best	Paramyxo_ncap	67.7	1.30e-18	91.9%	24.0%