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nucleocapsid
Euk-VirCedar_virus
nucleocapsid__YP_009094081__Cedar_virus__1221391
Identity
- Accession:
- YP_009094081 ↗
- Protein ID:
- nucleocapsid
- Kingdom:
- euk
Quality
74.1
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Paramyxoviridae›
Henipavirus›
Cedar_virus
TaxID: 1221391
Cluster
View cluster (62 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 32-142
Domain cluster:
rep: nucleocapsid_protein__YP_009177597__Phocine_morbillivirus__11240__D32-140
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00973.26 best | Paramyxo_ncap | 88.2 | 8.20e-25 | 100.0% | 26.2% |
D2
medium
residues 143-261
Domain cluster:
rep: nucleocapsid_protein__YP_009512957__Feline_morbillivirus__1170234__D152-264
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00973.26 best | Paramyxo_ncap | 161.3 | 5.00e-47 | 100.0% | 29.5% |
D3
medium
residues 264-422
Domain cluster:
rep: nucleocapsid_protein__NP_054707__Mumps_orthorubulavirus__2560602__D281-403
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00973.26 best | Paramyxo_ncap | 235.2 | 1.90e-69 | 86.2% | 34.0% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1n93X02 | 1.10.3050.10 | Mainly Alpha › Orthogonal Bundle › borna disease virus nucleoprotein, domain 2 › borna disease virus nucleoprotein, domain 2 | 0.68 | 52.0 | 5.77e-01 | 78.6% | 100.0% |
| 2gicD02 | 1.10.3610.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein | 0.68 | 60.0 | 5.60e-01 | 95.6% | 97.4% |
| 5hyhA00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.55 | 48.0 | 3.96e-01 | 95.6% | 77.0% |
| 2qr4A01 | 1.20.140.70 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Oligopeptidase f, N-terminal domain | 0.53 | 32.0 | 3.24e-01 | 91.8% | 59.0% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.53 | 34.0 | 3.82e-01 | 93.7% | 84.7% |
| 4u7iA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.52 | 28.0 | 3.55e-01 | 89.3% | 88.2% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2749214 | 566.1.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap | 0.89 | 67.0 | 4.83e-01 | 77.4% | 31.7% |
| 2756727 | 566.1.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap | 0.88 | 70.0 | 5.03e-01 | 84.3% | 33.0% |
| 2769765 | 566.1.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap | 0.88 | 73.0 | 5.21e-01 | 86.2% | 34.2% |
| 2996711 | 566.1.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap | 0.85 | 72.0 | 5.21e-01 | 88.1% | 34.7% |
| 2521251 | 566.1.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap | 0.82 | 68.0 | 4.90e-01 | 84.9% | 34.5% |
| 1763953 | 566.1.1.3 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Pneumo_ncap | 0.79 | 60.0 | 4.46e-01 | 78.6% | 34.7% |
| 3642919 | 611.7.1.16 ↗ | alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain › PUB2_N | 0.53 | 33.0 | 3.62e-01 | 93.1% | 72.6% |
| 3260973 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.52 | 32.0 | 3.69e-01 | 91.8% | 85.5% |
| 3699688 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.52 | 42.0 | 3.83e-01 | 86.2% | 73.6% |
| 3684973 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.51 | 41.0 | 3.06e-01 | 87.4% | 52.1% |
| 3614695 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 38.0 | 2.35e-01 | 79.9% | 18.9% |