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nucleocapsid
Euk-VirAlfalfa_dwarf_virus
nucleocapsid__YP_009177015__Alfalfa_dwarf_virus__998864
Identity
- Accession:
- YP_009177015 ↗
- Protein ID:
- nucleocapsid
- Kingdom:
- euk
Quality
74.0
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Alphacytorhabdovirus›
Alfalfa_dwarf_virus
TaxID: 998864
Cluster
View cluster (144 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 83-162_226-333
Domain cluster:
rep: N_protein__YP_010086409__Maize_yellow_striate_virus__1168550__D39-103_154-262
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03216.19 best | Rhabdo_ncap_2 | 37.4 | 2.80e-09 | 100.0% | 67.3% |
D2
high
residues 339-481
Domain cluster:
rep: nucleocapsid__YP_009289348__Sanxia_Water_Strider_Virus_5__1608064__D276-411
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03216.19 best | Rhabdo_ncap_2 | 53.9 | 2.50e-14 | 59.4% | 28.5% |