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nucleocapsid
Euk-VirWenzhou_Crab_Virus_1
nucleocapsid__YP_009304556__Wenzhou_Crab_Virus_1__1608091
Identity
- Accession:
- YP_009304556 ↗
- Protein ID:
- nucleocapsid
- Kingdom:
- euk
Quality
73.0
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Nyamiviridae›
Crustavirus›
Wenzhou_Crab_Virus_1
TaxID: 1608091
Cluster
View cluster (23 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 38-75_99-221
Domain cluster:
rep: nucleocapsid,_partial__YP_009044206__Sierra_Nevada_virus__1424280__D27-195
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qptA01 | 1.10.268.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › | 0.58 | 39.0 | 4.15e-01 | 80.1% | 76.0% |
| 3ejbH02 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.55 | 46.0 | 3.94e-01 | 90.1% | 82.8% |
| 2i2oA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 37.0 | 3.42e-01 | 100.0% | 54.5% |
| 3ckdA02 | 1.20.58.360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines | 0.51 | 30.0 | 3.35e-01 | 91.9% | 73.4% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4682562 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.54 | 48.0 | 4.59e-01 | 96.3% | 84.9% |
| 4364892 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.54 | 48.0 | 3.96e-01 | 96.3% | 56.1% |
| 3491731 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.52 | 30.0 | 3.23e-01 | 95.7% | 65.2% |
| 3934052 | 109.4.1.209 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Katanin_con80 | 0.52 | 37.0 | 3.70e-01 | 99.4% | 70.6% |
| 3995159 | 197.1.1.1 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › FERM_M | 0.51 | 35.0 | 4.09e-01 | 73.3% | 99.1% |
D2
high
residues 225-356
Domain cluster:
rep: N__YP_009508485__Southwest_carpet_python_virus__2016402__D213-328
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06407.16 best | BDV_P40 | 43.4 | 3.00e-11 | 97.0% | 25.2% |