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nucleocapsid

Euk-Vir

Wuhan_Fly_Virus_2

nucleocapsid__YP_009304651__Wuhan_Fly_Virus_2__1608102

Identity

Accession:: YP_009304651 ↗
Protein ID:: nucleocapsid
Kingdom:: euk

Quality

84.5 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Sigmavirus› Wuhan_Fly_Virus_2

TaxID: 1608102

Cluster

View cluster (144 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-228

PDB

Domain cluster: rep: nucleocapsid_protein__YP_008686596__Drosophila_obscura_sigmavirus_10A__666962__D36-146_214-247

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	101.1	9.60e-29	100.0%	42.2%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gttC01	1.10.3570.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain	0.88	84.0	8.38e-01	99.5%	99.5%
3hhwK01	1.10.3570.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain	0.87	81.0	8.29e-01	99.5%	100.0%
1n93X01	1.10.3040.10	Mainly Alpha › Orthogonal Bundle › borna disease virus nucleoprotein, domain 1 › borna disease virus nucleoprotein, domain 1	0.57	51.0	4.96e-01	97.9%	91.3%
3i2fA02	1.10.3020.10	Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain)	0.54	24.0	3.23e-01	97.4%	77.9%
4j8sA00	1.25.40.840	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › CCR4-NOT transcription complex subunit 1 TTP binding domain	0.51	38.0	3.93e-01	100.0%	81.7%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2966640	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.90	85.0	6.38e-01	100.0%	46.0%
4846751	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.90	86.0	7.41e-01	100.0%	70.3%
2992377	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.89	86.0	6.63e-01	100.0%	52.6%
3712511	1128.1.1.0 ↗	alpha bundles › LYR protein › LYR protein › LYR protein	0.67	28.0	4.05e-01	84.7%	84.7%
2756727	566.1.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap	0.63	58.0	4.54e-01	98.9%	71.3%
2749214	566.1.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap	0.62	57.0	4.51e-01	98.9%	73.0%
4460903	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.61	26.0	3.66e-01	74.1%	81.1%
3697295	4336.1.1.5 ↗	alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › HAM1_N	0.55	23.0	3.52e-01	91.5%	96.0%
4964270	3651.1.1.1 ↗	alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B	0.55	25.0	3.28e-01	83.6%	77.0%
3993713	109.4.1.14 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MyTH4	0.52	35.0	3.65e-01	98.4%	73.7%
3756209	110.1.1.4 ↗	alpha arrays › DEATH domain › DEATH domain › DEATH domain › PYRIN	0.50	27.0	3.50e-01	94.2%	95.0%

D2 high residues 233-350_390-434

PDB

Domain cluster: rep: nucleoprotein__YP_009094365__Almpiwar_virus__318843__D225-426

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	99.6	2.80e-28	86.5%	31.5%