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nucleocapsid
Euk-VirWuhan_House_Fly_Virus_1
nucleocapsid__YP_009304975__Wuhan_House_Fly_Virus_1__1608104
Identity
- Accession:
- YP_009304975 ↗
- Protein ID:
- nucleocapsid
- Kingdom:
- euk
Quality
72.5
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Sigmavirus›
Wuhan_House_Fly_Virus_1
TaxID: 1608104
Cluster
View cluster (144 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 47-223
Domain cluster:
rep: nucleocapsid_protein__YP_008686596__Drosophila_obscura_sigmavirus_10A__666962__D36-146_214-247
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00945.24 best | Rhabdo_ncap | 108.6 | 4.90e-31 | 97.2% | 40.5% |
D2
medium
residues 250-352
Domain cluster:
rep: nucleocapsid_protein__YP_009094263__Grass_carp_virus__1288359__D228-303
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00945.24 best | Rhabdo_ncap | 77.1 | 1.90e-21 | 100.0% | 22.7% |
D3
medium
residues 397-455
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gicD02 | 1.10.3610.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein | 0.88 | 75.0 | 5.05e-01 | 91.5% | 27.7% |