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nucleocapsid

Euk-Vir

Ferak_virus

nucleocapsid__YP_009664552__Ferak_virus__1664810

Identity

Accession:
YP_009664552 ↗
Protein ID:
nucleocapsid
Kingdom:
euk

Quality

72.4 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Elliovirales› Phasmaviridae› Feravirus› Ferak_virus

TaxID: 1664810

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-141
PDB
D2 high residues 164-285
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.71 49.0 5.71e-01 89.3% 100.0%
2ggfA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.67 50.0 4.88e-01 78.7% 82.5%
1k8kG00 1.25.40.190 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Actin-related protein 2/3 complex subunit 5 0.67 44.0 4.26e-01 78.7% 59.0%
1vkeB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.63 44.0 4.80e-01 77.0% 88.1%
2np5D00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 44.0 4.12e-01 79.5% 84.8%
2cfuA02 1.25.40.880 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Alkyl sulfatase, dimerisation domain 0.57 34.0 3.27e-01 84.4% 50.4%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.57 52.0 4.98e-01 100.0% 88.5%
2oifB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 50.0 4.69e-01 98.4% 86.1%
4hzuS00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.56 39.0 3.58e-01 71.3% 54.9%
3au4A01 1.25.40.530 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain 0.56 49.0 4.25e-01 97.5% 100.0%
4crwA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 45.0 3.70e-01 86.9% 70.4%
1yhuB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 47.0 4.52e-01 95.9% 86.8%
1s2xA00 1.20.190.30 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › CAG pathogenicity island protein, CagZ 0.55 38.0 3.32e-01 70.5% 97.8%
3ubcA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 45.0 4.43e-01 95.1% 84.0%
1nc5A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.54 46.0 3.30e-01 92.6% 72.2%
4qqwA01 1.10.3210.30 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › 0.54 42.0 3.32e-01 81.1% 67.9%
1ithA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 46.0 4.38e-01 91.8% 83.0%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 48.0 4.53e-01 100.0% 84.0%
2zs0A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 45.0 4.39e-01 95.1% 87.9%
7eu3E01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 36.0 4.12e-01 99.2% 95.4%
3ppbA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 44.0 3.83e-01 89.3% 63.8%
3hyuA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 47.0 4.52e-01 99.2% 86.5%
4nufA02 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.53 41.0 3.60e-01 81.1% 60.9%
2w31A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 46.0 4.33e-01 95.9% 82.2%
8e9gK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 34.0 3.80e-01 97.5% 84.6%
4zvaA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 46.0 4.36e-01 96.7% 79.9%
1or4B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 45.0 4.14e-01 92.6% 75.3%
3f2eA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 34.0 3.98e-01 90.2% 95.2%
6srbA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 39.0 4.07e-01 77.0% 86.2%
1gcvB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 45.0 4.38e-01 97.5% 86.0%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 40.0 3.90e-01 83.6% 97.9%
1ldjA02 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.52 38.0 3.87e-01 77.0% 95.9%
2gnxA01 1.10.3450.30 Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › 0.51 42.0 3.76e-01 89.3% 91.1%
6ll8A01 3.90.1640.10 Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › inorganic pyrophosphatase (n-terminal core) 0.51 39.0 3.46e-01 82.8% 94.6%
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.50 39.0 4.01e-01 83.6% 99.1%
5hayA02 1.25.40.440 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain 0.50 31.0 3.71e-01 93.4% 94.9%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3987023 1113.1.1.1 ↗ alpha arrays › Protein of Unknown Function YPO2564 › Protein of Unknown Function YPO2564 › Protein of Unknown Function YPO2564 › DUF1198 0.67 49.0 4.70e-01 95.1% 66.4%
4511845 131.1.1.24 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › tRNA_synt_2f 0.64 58.0 4.84e-01 100.0% 81.4%
1891443 1113.1.1.1 ↗ alpha arrays › Protein of Unknown Function YPO2564 › Protein of Unknown Function YPO2564 › Protein of Unknown Function YPO2564 › DUF1198 0.64 50.0 4.88e-01 100.0% 77.1%
3741234 605.2.1.3 ↗ alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N 0.62 27.0 2.84e-01 77.9% 40.9%
3279371 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.60 44.0 4.17e-01 82.8% 64.1%
3997392 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.59 53.0 4.69e-01 100.0% 83.3%
51190 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.59 52.0 4.87e-01 98.4% 87.0%
3244338 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.58 52.0 4.65e-01 100.0% 81.6%
3712041 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 47.0 3.52e-01 87.7% 67.7%
3749914 3352.1.1.12 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › Dpy19 0.57 45.0 2.95e-01 82.8% 26.2%
4578863 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.57 51.0 4.70e-01 100.0% 84.9%
4187493 603.1.1.103 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF29732 0.56 41.0 3.92e-01 76.2% 90.3%
3929607 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.56 49.0 4.45e-01 100.0% 81.2%
4531719 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.55 44.0 3.42e-01 90.2% 37.5%
3680364 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.55 49.0 4.37e-01 100.0% 82.3%
3219325 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.54 48.0 4.41e-01 98.4% 81.6%
5055663 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.54 40.0 3.94e-01 95.1% 73.1%
5061263 140.1.1.7 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 0.53 39.0 3.31e-01 75.4% 85.0%
3695092 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 44.0 3.70e-01 90.2% 72.7%
4660776 109.4.1.2020 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, Fes1, PF28415 0.52 41.0 3.40e-01 82.8% 58.1%
4015415 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.52 36.0 3.27e-01 72.1% 61.1%
3601936 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.52 46.0 4.41e-01 99.2% 89.3%
3290903 2498.1.1.6 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3 0.52 45.0 2.94e-01 100.0% 67.6%
5001160 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.51 38.0 3.73e-01 77.0% 76.2%