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nucleocapsid
Euk-VirMelao_virus
nucleocapsid__YP_009666971__Melao_virus__35515
Identity
- Accession:
- YP_009666971 ↗
- Protein ID:
- nucleocapsid
- Kingdom:
- euk
Quality
86.3
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Elliovirales›
Peribunyaviridae›
Orthobunyavirus›
Melao_virus
TaxID: 35515
Cluster
View cluster (71 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-109
Domain cluster:
rep: nucleoprotein__YP_010086207__Caimito_virus__2572766__D12-126
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00952.24 best | Bunya_nucleocap | 109.5 | 2.70e-31 | 100.0% | 39.0% |
D2
medium
residues 139-235
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00952.24 best | Bunya_nucleocap | 136.9 | 1.20e-39 | 99.0% | 41.2% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zlaA02 | 1.10.472.180 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Bunyavirus nucleocapsid (N) protein, C-terminal domain | 0.92 | 78.0 | 7.70e-01 | 100.0% | 84.3% |
| 3rauA00 | 1.25.40.280 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains | 0.62 | 45.0 | 3.11e-01 | 77.3% | 88.3% |
| 5gmkZ01 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 41.0 | 3.18e-01 | 84.5% | 47.8% |
| 4biuE01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.52 | 30.0 | 3.09e-01 | 93.8% | 55.1% |
| 2q1zD01 | 1.10.10.1320 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Anti-sigma factor, zinc-finger domain | 0.50 | 29.0 | 3.03e-01 | 70.1% | 60.2% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1014397 | 3644.1.1.2 ↗ | alpha complex topology › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Bunya_nucleocap | 0.92 | 74.0 | 5.45e-01 | 82.5% | 37.0% |
| 224425 | 3644.1.1.2 ↗ | alpha complex topology › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Bunya_nucleocap | 0.86 | 73.0 | 5.33e-01 | 100.0% | 36.8% |
| 4461864 | 172.2.1.1 ↗ | alpha complex topology › Citrate synthase-like › Urease accessory protein ureF › Urease accessory protein ureF › UreF | 0.59 | 41.0 | 3.15e-01 | 72.2% | 80.9% |
| 5010728 | 3352.1.1.0 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain | 0.52 | 39.0 | 2.70e-01 | 81.4% | 70.8% |
| 3672432 | 109.46.1.11 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › WD40, Beta-prop_IFT122_1st | 0.50 | 37.0 | 2.42e-01 | 79.4% | 20.4% |