nucleocapsid

Euk-Vir

Yerba_mate_chlorosis-associated_virus

nucleocapsid__YP_010087158__Yerba_mate_chlorosis-associated_virus__2487100

Identity

64.9 mean pLDDT

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Betacytorhabdovirus› Yerba_mate_chlorosis-associated_virus

TaxID: 2487100

View cluster (144 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 267-391

PDB

Domain cluster: rep: nucleocapsid_protein__YP_010087150__Cytorhabdovirus_caricae__2364291__D277-416_434-447

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03216.19 best	Rhabdo_ncap_2	48.7	9.80e-13	64.8%	28.2%

D2 medium residues 29-83_156-266

PDB

Domain cluster: rep: N_protein__YP_010086409__Maize_yellow_striate_virus__1168550__D39-103_154-262

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03216.19 best	Rhabdo_ncap_2	49.1	7.50e-13	71.1%	36.1%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gttC01	1.10.3570.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain	0.66	58.0	5.54e-01	95.2%	100.0%
3sl9B00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.61	39.0	3.92e-01	89.8%	63.0%
3eslA02	1.25.40.930	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.57	34.0	3.90e-01	86.7%	79.8%
2gnoA03	1.20.272.10	Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 ›	0.57	28.0	3.50e-01	97.6%	75.0%
1zu2A00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.57	35.0	3.61e-01	88.6%	62.7%
3p5nA00	1.10.1760.20	Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 ›	0.55	40.0	3.99e-01	73.5%	96.4%
3dadA00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.54	40.0	3.24e-01	91.0%	39.8%
2epkX03	1.20.120.670	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › N-acetyl-b-d-glucoasminidase	0.51	32.0	2.89e-01	96.4%	46.0%
1bwoA00	1.10.110.10	Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins	0.51	28.0	3.55e-01	81.9%	95.6%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3601961	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	35.0	4.06e-01	84.3%	91.7%
3310203	109.4.1.75 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IFRD	0.53	38.0	4.11e-01	94.0%	88.6%
3439705	3758.1.1.7 ↗	alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › BPS1	0.51	39.0	3.56e-01	78.9%	98.2%
3845802	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	40.0	3.58e-01	91.0%	57.9%
3346499	109.4.1.46 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N	0.50	37.0	3.99e-01	91.0%	92.6%
3291885	622.1.1.9 ↗	alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › DnaJ-X	0.50	39.0	3.59e-01	81.9%	98.7%
3584979	109.4.1.224 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CNOT1_CAF1_bind	0.50	40.0	4.23e-01	98.2%	95.3%
3175425	1075.5.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE	0.50	36.0	3.50e-01	74.1%	73.7%
None	—		0.50	45.0	3.74e-01	100.0%	98.4%