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nucleocapsid
Euk-VirRobina_orthohantavirus
nucleocapsid__YP_010088055__Robina_orthohantavirus__2601243
Identity
- Accession:
- YP_010088055 ↗
- Protein ID:
- nucleocapsid
- Kingdom:
- euk
Quality
82.5
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Elliovirales›
Hantaviridae›
Mobatvirus›
Orthohantavirus_robinaense
TaxID: 2601243
Cluster
View cluster (28 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 116-221
Domain cluster:
rep: hypothetical_protein__NP_941977__Hantaan_orthohantavirus__1980471__D78-200
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00846.25 best | Hanta_nucleocap | 164.3 | 6.30e-48 | 100.0% | 24.8% |
D2
medium
residues 222-297
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00846.25 best | Hanta_nucleocap | 39.9 | 3.60e-10 | 100.0% | 17.3% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8f2lE01 | 1.10.1740.110 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.56 | 37.0 | 3.51e-01 | 76.3% | 53.5% |
| 2qrlA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 32.0 | 2.47e-01 | 71.1% | 25.0% |
| 3ue3A02 | 3.30.450.330 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.52 | 36.0 | 3.00e-01 | 73.7% | 65.5% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3782635 | 3837.1.1.1 ↗ | alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 | 0.58 | 40.0 | 3.20e-01 | 72.4% | 63.2% |
| 3574993 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.52 | 34.0 | 2.85e-01 | 88.2% | 38.5% |
| 3829168 | 5050.1.1.2 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2 | 0.52 | 40.0 | 3.03e-01 | 90.8% | 51.1% |
D3
medium
residues 298-429
Domain cluster:
rep: nucleocapsid_protein__YP_001911121__Thottopalayam_virus__1980493__D301-430
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00846.25 best | Hanta_nucleocap | 245.7 | 1.30e-72 | 100.0% | 30.2% |