←Back to structures

nucleocapsid

Euk-Vir

Tatenale_orthohantavirus

nucleocapsid__YP_010088057__Tatenale_orthohantavirus__2651812

Identity

Accession:: YP_010088057 ↗
Protein ID:: nucleocapsid
Kingdom:: euk

Quality

83.1 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Elliovirales› Hantaviridae› Orthohantavirus› Orthohantavirus_tatenalense

TaxID: 2651812

Cluster

View cluster (28 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 119-181

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00846.25 best	Hanta_nucleocap	92.8	3.10e-26	100.0%	14.8%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2jdjA00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.56	38.0	3.29e-01	82.5%	43.3%
5awwY00	1.10.3370.10	Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain	0.54	38.0	2.38e-01	77.8%	22.9%
2cg8C01	3.30.1130.10	Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain	0.54	38.0	3.23e-01	82.5%	41.2%
6fnnB01	3.40.140.10	Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2	0.54	38.0	3.09e-01	82.5%	34.7%
2l97A01	2.30.42.10	Mainly Beta › Roll › Pdz3 Domain › PDZ domain	0.53	42.0	3.76e-01	95.2%	59.6%
1uyvB02	3.90.226.10	Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1	0.52	35.0	2.37e-01	73.0%	37.1%
1fs0G01	3.40.1380.10	Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit	0.51	36.0	2.98e-01	81.0%	36.9%
1a7jA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.51	41.0	2.71e-01	90.5%	78.9%
1kvzA00	3.10.130.10	Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain	0.51	41.0	3.63e-01	100.0%	85.0%
5cw3C01	3.40.140.10	Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2	0.51	40.0	3.19e-01	92.1%	57.1%
2p35A01	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.50	40.0	3.03e-01	92.1%	92.5%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4796002	192.8.1.2 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Hanta_nucleocap	0.92	86.0	5.44e-01	100.0%	23.2%
1005435	304.135.1.0 ↗	a+b two layers › Alpha-beta plaits › O-phosphoseryl-tRNA synthetase C-terminal domain › O-phosphoseryl-tRNA synthetase C-terminal domain	0.61	44.0	4.19e-01	93.7%	65.8%
4488169	2004.1.1.63 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FtsK_SpoIIIE	0.60	42.0	3.05e-01	74.6%	28.1%
3694646	223.1.1.2 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › PAS	0.59	50.0	3.99e-01	100.0%	65.7%
5057424	177.1.1.0 ↗	alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease	0.57	48.0	3.42e-01	100.0%	55.9%
None	—		0.56	40.0	2.63e-01	77.8%	16.2%
5072539	1036.1.1.1 ↗	a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3	0.55	34.0	2.82e-01	77.8%	34.8%
4041628	3281.1.1.2 ↗	alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N	0.54	44.0	2.67e-01	95.2%	63.0%
3958772	223.1.1.0 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains	0.54	44.0	3.41e-01	92.1%	94.2%
1732259	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.53	38.0	3.79e-01	100.0%	74.2%
3243265	5001.1.1.25 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Sru	0.52	39.0	2.59e-01	84.1%	39.7%
4361061	327.10.1.2 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › RBFA	0.51	40.0	3.34e-01	88.9%	75.0%
3493752	158.1.1.1 ↗	alpha bundles › Lipoxygenase › Lipoxygenase › Lipoxygenase › Lipoxygenase	0.51	42.0	2.48e-01	95.2%	92.6%
3249830	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.50	38.0	3.11e-01	84.1%	91.2%
3636298	5001.1.1.6 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Bac_rhodopsin	0.50	42.0	2.94e-01	100.0%	55.0%

D2 medium residues 1-76

PDB

Domain cluster: rep: nucleocapsid_protein__YP_009362056__Cao_Bang_orthohantavirus__1980464__D1-71

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00846.25 best	Hanta_nucleocap	32.6	5.80e-08	100.0%	17.1%

D3 medium residues 193-308

PDB

Domain cluster: rep: nucleocapsid_protein__YP_009361844__Jeju_virus__990280__D216-309

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00846.25 best	Hanta_nucleocap	88.9	5.00e-25	100.0%	25.3%

D4 medium residues 309-427

PDB

Domain cluster: rep: nucleocapsid_protein__YP_001911121__Thottopalayam_virus__1980493__D301-430

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00846.25 best	Hanta_nucleocap	232.4	1.40e-68	100.0%	27.9%