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nucleocapsid_protein,_partial
Euk-VirChim_orthonairovirus
nucleocapsid_protein,_partial__YP_009666114__Chim_orthonairovirus__2170062
Identity
- Accession:
- YP_009666114 ↗
- Protein ID:
- nucleocapsid_protein,_partial
- Kingdom:
- euk
Quality
80.3
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Hareavirales›
Nairoviridae›
Orthonairovirus›
Orthonairovirus_chimense
TaxID: 2170062
Cluster
View cluster (24 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 193-299
Domain cluster:
rep: nucleoprotein__YP_009553334__Tunis_virus__1810944__D200-304
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02477.21 best | Nairo_nucleo | 26.4 | 4.50e-06 | 99.1% | 14.7% |
D2
medium
residues 44-77_156-187_413-491
Domain cluster:
rep: nucleocapside__YP_009111286__Leopards_Hill_virus__1381104__D44-75_156-179_418-493
D3
medium
residues 78-155
Domain cluster:
rep: nucleoprotein__YP_009551659__Great_Saltee_virus__1810946__D96-157
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02477.21 best | Nairo_nucleo | 54.4 | 1.40e-14 | 100.0% | 16.5% |
D4
medium
residues 314-412
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02477.21 best | Nairo_nucleo | 110.5 | 1.30e-31 | 100.0% | 21.9% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4efcA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.58 | 33.0 | 3.96e-01 | 72.7% | 90.2% |
| 4mcwA02 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.56 | 45.0 | 3.62e-01 | 85.9% | 87.0% |
| 5e9hB01 | 1.10.10.850 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.55 | 36.0 | 3.54e-01 | 70.7% | 59.3% |
| 7ebcA01 | 1.10.10.850 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.55 | 37.0 | 3.60e-01 | 70.7% | 62.9% |
| 8jpdG01 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.53 | 38.0 | 3.40e-01 | 74.7% | 61.4% |
| 7vzgC01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.53 | 44.0 | 3.88e-01 | 96.0% | 59.7% |
| 7wf8B01 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.51 | 39.0 | 3.67e-01 | 80.8% | 74.4% |
| 4z4qA04 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.51 | 36.0 | 3.80e-01 | 80.8% | 84.3% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1723600 | 3574.1.1.1 ↗ | alpha complex topology › Nucleocapsid protein › Nucleocapsid protein › Nucleocapsid protein › Nairo_nucleo | 0.93 | 89.0 | 5.49e-01 | 100.0% | 20.7% |
| 4890819 | 3574.1.1.1 ↗ | alpha complex topology › Nucleocapsid protein › Nucleocapsid protein › Nucleocapsid protein › Nairo_nucleo | 0.90 | 85.0 | 5.28e-01 | 100.0% | 20.9% |
| 5076914 | 563.2.1.0 ↗ | alpha bundles › ATPD N-terminal domain-like › Cas Cmr5-like › Cas Cmr5-like | 0.64 | 55.0 | 5.20e-01 | 94.9% | 99.2% |
| 3656267 | 176.1.1.1 ↗ | alpha arrays › Annexin › Annexin › Annexin › Annexin | 0.56 | 35.0 | 3.44e-01 | 78.8% | 57.1% |
| 3727024 | 4156.1.1.5 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › POLQ_helical | 0.53 | 46.0 | 3.94e-01 | 100.0% | 97.6% |
| 3898725 | 108.1.1.30 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_8 | 0.53 | 44.0 | 3.79e-01 | 92.9% | 57.6% |
| 3595509 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.53 | 45.0 | 3.15e-01 | 97.0% | 39.1% |
| 3698664 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.52 | 45.0 | 3.16e-01 | 99.0% | 40.3% |
| 5050788 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.51 | 44.0 | 3.06e-01 | 97.0% | 42.0% |