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nucleocapsid_protein,_partial

Euk-Vir

Burana_virus

nucleocapsid_protein,_partial__YP_009666116__Burana_virus__1453404

Identity

Accession:: YP_009666116 ↗
Protein ID:: nucleocapsid_protein,_partial
Kingdom:: euk

Quality

72.7 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Hareavirales› Nairoviridae› Orthonairovirus› Burana_virus

TaxID: 1453404

Cluster

View cluster (24 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 197-298

PDB

Domain cluster: rep: nucleocapsid_protein__YP_009293589__Huangpi_Tick_Virus_1__1608047__D193-288

D2 medium residues 1-56

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5kiqA02	3.10.20.890	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.63	43.0	3.96e-01	71.4%	69.4%
2o0jA02	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.59	42.0	2.80e-01	78.6%	31.1%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4670452	2007.6.1.4 ↗	a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS	0.54	40.0	2.79e-01	83.9%	68.3%

D3 medium residues 57-85_141-190_347-493

PDB

D4 medium residues 86-140_310-346

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02477.21 best	Nairo_nucleo	34.3	1.80e-08	62.0%	12.0%
PF02477.21	Nairo_nucleo	41.3	1.30e-10	43.5%	8.1%

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1b0bA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.58	42.0	3.66e-01	76.1%	60.3%
3ubcA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.57	41.0	3.74e-01	77.2%	55.7%
3f2eA00	1.20.58.800	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.57	37.0	3.84e-01	75.0%	72.3%
2zs0A00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.57	41.0	3.61e-01	76.1%	56.4%
4l8eA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.56	40.0	3.81e-01	75.0%	90.9%
3q5dA02	1.20.58.420	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP	0.56	38.0	3.78e-01	70.7%	79.4%
4uiqB00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.55	39.0	3.40e-01	76.1%	46.4%
1x3kA01	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.55	39.0	3.40e-01	75.0%	55.8%
2ycdA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.54	40.0	3.77e-01	79.3%	90.6%
3cbuA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.54	42.0	3.69e-01	82.6%	82.1%
1cpcB00	1.10.490.20	Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins	0.52	37.0	3.13e-01	76.1%	44.2%
1ecaA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.52	35.0	3.20e-01	70.7%	94.9%
1wp1B01	1.20.1600.10	Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP)	0.51	38.0	2.59e-01	79.3%	48.3%
3l09A01	1.20.58.1460	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	35.0	3.49e-01	71.7%	72.4%
4p3gD00	1.10.3450.40	Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › Signal recognition particle, SRP68 subunit, RNA-binding domain	0.50	43.0	3.38e-01	94.6%	88.7%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3971690	601.3.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain	0.54	41.0	3.78e-01	83.7%	91.2%
3630501	1075.4.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold	0.52	38.0	2.63e-01	78.3%	45.1%