nucleocapsid_protein_N

Euk-Vir

Pacui_virus

nucleocapsid_protein_N__YP_009666930__Pacui_virus__1538454

Identity

87.1 mean pLDDT

Orthornavirae› Negarnaviricota› Bunyaviricetes› Elliovirales› Peribunyaviridae› Pacuvirus› Pacui_virus

TaxID: 1538454

View cluster (71 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 13-132

PDB

Domain cluster: rep: nucleoprotein__YP_010086207__Caimito_virus__2572766__D12-126

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00952.24 best	Bunya_nucleocap	87.1	1.90e-24	100.0%	50.9%

D2 medium residues 133-156_214-246

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1oxjA01	1.10.150.50	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1	0.51	30.0	2.98e-01	100.0%	50.8%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3178069	239.3.1.0 ↗	beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain	0.55	41.0	2.91e-01	80.7%	42.9%

D3 medium residues 157-213

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00952.24 best	Bunya_nucleocap	34.6	2.20e-08	100.0%	22.4%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3zlaA02	1.10.472.180	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Bunyavirus nucleocapsid (N) protein, C-terminal domain	0.93	86.0	6.87e-01	100.0%	54.9%
3b8pA00	3.30.1890.10	Alpha Beta › 2-Layer Sandwich › Bacterial polysaccharide co-polymerase-like › FepE-like	0.58	43.0	3.08e-01	86.0%	48.3%
3fblA00	1.20.58.800	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.56	45.0	4.04e-01	91.2%	69.5%
2i0mA01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.55	43.0	3.54e-01	87.7%	71.7%
1mhyG01	1.20.1280.10	Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 1	0.54	36.0	3.50e-01	70.2%	64.7%
4ad9A02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.50	42.0	3.81e-01	100.0%	67.9%
2n00A00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.50	37.0	3.26e-01	84.2%	68.4%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3591328	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.60	45.0	3.73e-01	84.2%	73.6%
3720948	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.56	45.0	4.23e-01	100.0%	74.7%
3975961	5058.1.1.88 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_TM1	0.55	34.0	2.86e-01	91.2%	36.0%
4324544	101.1.2.451 ↗	alpha arrays › HTH › HTH › winged helix domain › NPR3	0.54	40.0	3.27e-01	100.0%	42.9%
3201553	145.1.1.0 ↗	alpha arrays › F-box domain › F-box domain › F-box domain	0.54	39.0	4.04e-01	98.2%	83.6%
3312914	7512.1.1.77 ↗	a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_N	0.54	41.0	2.71e-01	84.2%	39.2%
4025757	603.1.1.6 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2	0.53	38.0	2.63e-01	78.9%	58.6%
3869754	109.16.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › TROVE domain-like › TROVE domain-like › TROVE	0.52	43.0	2.61e-01	96.5%	88.9%
3990289	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.51	38.0	3.88e-01	84.2%	90.7%