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nucleocapsid_protein_N
Euk-VirEnseada_virus
nucleocapsid_protein_N__YP_009666944__Enseada_virus__1821545
Identity
- Accession:
- YP_009666944 ↗
- Protein ID:
- nucleocapsid_protein_N
- Kingdom:
- euk
Quality
85.9
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Elliovirales›
Peribunyaviridae›
Orthobunyavirus›
Enseada_virus
TaxID: 1821545
Cluster
View cluster (71 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-124
Domain cluster:
rep: nucleoprotein__YP_010086207__Caimito_virus__2572766__D12-126
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00952.24 best | Bunya_nucleocap | 99.7 | 2.80e-28 | 100.0% | 43.4% |
D2
high
residues 133-214
Domain cluster:
rep: nucleocapsid__YP_009666971__Melao_virus__35515__D139-235
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00952.24 best | Bunya_nucleocap | 112.2 | 4.00e-32 | 100.0% | 35.1% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zlaA02 | 1.10.472.180 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Bunyavirus nucleocapsid (N) protein, C-terminal domain | 0.97 | 92.0 | 8.36e-01 | 98.8% | 78.4% |
| 4dylA02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.58 | 34.0 | 3.25e-01 | 98.8% | 48.9% |
| 2elcA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.55 | 39.0 | 4.12e-01 | 82.9% | 91.0% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.55 | 38.0 | 3.98e-01 | 73.2% | 90.9% |
| 2wglA00 | 1.10.4190.10 | Mainly Alpha › Orthogonal Bundle › Urease accessory protein UreF › Urease accessory protein UreF | 0.52 | 41.0 | 3.15e-01 | 89.0% | 47.8% |
| 2qw6D00 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.51 | 37.0 | 3.67e-01 | 76.8% | 95.3% |
| 5xfaA04 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.51 | 36.0 | 3.65e-01 | 76.8% | 72.9% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.50 | 35.0 | 3.15e-01 | 73.2% | 86.3% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 224425 | 3644.1.1.2 ↗ | alpha complex topology › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Bunya_nucleocap | 0.96 | 91.0 | 6.27e-01 | 100.0% | 34.6% |
| 1014397 | 3644.1.1.2 ↗ | alpha complex topology › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Bunya_nucleocap | 0.96 | 90.0 | 6.36e-01 | 100.0% | 37.5% |
| 5011224 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.60 | 48.0 | 3.34e-01 | 97.6% | 25.3% |
| 3767831 | 101.1.10.12 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Spy1 | 0.58 | 49.0 | 4.30e-01 | 98.8% | 83.0% |
| 3917631 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.56 | 40.0 | 3.60e-01 | 74.4% | 88.2% |
| 3733039 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.53 | 46.0 | 2.99e-01 | 100.0% | 69.7% |