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nucleocapsid_protein

Euk-Vir

Mapuera_orthorubulavirus

nucleocapsid_protein__ABQ23934__Mapuera_orthorubulavirus__2560582

Identity

Accession:: ABQ23934 ↗
Protein ID:: nucleocapsid_protein
Kingdom:: euk

Quality

78.4 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Paramyxoviridae› Orthorubulavirus› Orthorubulavirus_mapueraense

TaxID: 2560582

Cluster

View cluster (62 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 266-399

PDB

Domain cluster: rep: nucleocapsid_protein__NP_054707__Mumps_orthorubulavirus__2560602__D281-403

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00973.26 best	Paramyxo_ncap	202.1	2.00e-59	100.0%	33.2%

D2 high residues 455-508

PDB

Domain cluster: representative

CATH (20)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2im9A03	1.10.287.520	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.70	45.0	5.12e-01	85.2%	97.2%
4cc9B00	1.20.5.4730	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.63	49.0	4.03e-01	85.2%	46.9%
2zs0A00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.63	54.0	4.09e-01	100.0%	48.6%
1onfA01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.59	51.0	3.51e-01	100.0%	37.3%
1irxA04	1.10.10.770	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.59	43.0	3.52e-01	79.6%	39.8%
3ddhA02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.59	44.0	3.99e-01	85.2%	56.8%
3ajfA00	1.20.1440.190	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tenuivirus movement protein	0.59	45.0	3.85e-01	85.2%	81.5%
4i0xG00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.58	39.0	3.72e-01	100.0%	57.4%
2b1eA01	1.20.58.1150	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.57	39.0	3.35e-01	100.0%	44.2%
3cxbA01	3.30.2440.10	Alpha Beta › 2-Layer Sandwich › Secreted effector protein SifA fold › Secreted effector protein SifA	0.57	41.0	3.30e-01	79.6%	63.5%
7utzR02	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.57	46.0	3.04e-01	98.1%	86.1%
6ygiB01	1.10.4090.10	Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus	0.55	42.0	3.11e-01	83.3%	89.0%
4a17U01	1.10.287.310	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.55	39.0	3.48e-01	100.0%	53.2%
4me3A01	3.30.1640.10	Alpha Beta › 2-Layer Sandwich › mini-chromosome maintenance (MCM) complex, chain A, domain 1 › mini-chromosome maintenance (MCM) complex, chain A, domain 1	0.55	41.0	3.60e-01	88.9%	52.1%
3iylB02	1.10.2050.10	Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 3 › Protein mu-1, chain B, domain 3	0.54	46.0	3.52e-01	98.1%	97.8%
4errB00	1.20.58.1190	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	38.0	3.31e-01	100.0%	50.6%
2c0gA02	1.20.1150.12	Mainly Alpha › Up-down Bundle › Endoplasmic reticulum protein erp29 › Endoplasmic reticulum resident protein 29, C-terminal domain	0.52	43.0	3.46e-01	92.6%	81.1%
4dciA00	6.10.140.1110	Special › Helix non-globular › Helix Hairpins ›	0.52	46.0	3.33e-01	100.0%	36.7%
2fd5A01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.51	35.0	3.62e-01	74.1%	81.2%
3c24A02	1.10.3640.10	Mainly Alpha › Orthogonal Bundle › putative oxidoreductase fold › Semialdehyde dehydrogenase-like, C-terminal	0.51	36.0	3.11e-01	81.5%	99.0%

ECOD (18)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3923696	198.1.1.0 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like	0.70	62.0	5.23e-01	100.0%	73.3%
4013585	192.7.1.0 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm	0.66	44.0	4.04e-01	100.0%	51.4%
4941837	5069.1.1.0 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes	0.65	48.0	3.57e-01	77.8%	80.8%
4487944	605.1.1.131 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Val_tRNA-synt_C	0.65	42.0	3.95e-01	100.0%	53.8%
4525456	864.1.1.2 ↗	a+b two layers › DLC › DLC › DLC › Tctex-1	0.63	46.0	3.69e-01	83.3%	38.3%
4092726	2003.1.2.8 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2,Pyr_redox_2	0.61	52.0	3.50e-01	100.0%	35.9%
5040843	5058.1.1.0 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region	0.59	45.0	3.89e-01	100.0%	50.5%
5028327	5060.2.1.1 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF	0.58	42.0	2.95e-01	79.6%	36.9%
5063527	2004.1.1.85 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ArsA_ATPase	0.58	41.0	2.77e-01	79.6%	25.3%
3494198	328.7.1.0 ↗	a+b two layers › IF3-like › Smr domain › Smr domain	0.58	43.0	3.00e-01	81.5%	61.6%
3580238	5067.1.1.0 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain	0.57	42.0	3.26e-01	87.0%	31.7%
3023635	5071.1.1.1 ↗	alpha bundles › cytochrome bc1 complex 11 kDa protein-like › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › UCR_hinge	0.56	48.0	4.18e-01	100.0%	96.5%
5074223	622.5.1.0 ↗	alpha bundles › YvfG-like › Probable 26S proteasome regulatory subunit p27 › Probable 26S proteasome regulatory subunit p27	0.56	42.0	3.67e-01	87.0%	73.3%
3592091	603.2.1.27 ↗	alpha bundles › STAT-like › STAT › STAT › PF26179	0.56	39.0	2.86e-01	100.0%	25.6%
5020110	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.54	46.0	3.82e-01	100.0%	52.0%
3595694	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	46.0	3.21e-01	100.0%	28.7%
3258488	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.52	41.0	3.35e-01	85.2%	65.0%
3486748	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.52	36.0	2.93e-01	74.1%	69.5%

D3 medium residues 32-144

PDB

Domain cluster: rep: nucleocapsid_protein__YP_009177597__Phocine_morbillivirus__11240__D32-140

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00973.26 best	Paramyxo_ncap	81.4	9.30e-23	100.0%	27.0%

D4 medium residues 145-262

PDB

Domain cluster: rep: nucleocapsid_protein__YP_009512957__Feline_morbillivirus__1170234__D152-264

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00973.26 best	Paramyxo_ncap	117.3	1.10e-33	100.0%	29.2%