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nucleocapsid_protein

Euk-Vir

Avian_metaavulavirus_2

nucleocapsid_protein__ACA49104__Avian_metaavulavirus_2__2560313

Identity

Accession:: ACA49104 ↗
Protein ID:: nucleocapsid_protein
Kingdom:: euk

Quality

78.5 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Paramyxoviridae› Metaavulavirus› avian_paramyxovirus_2

TaxID: 2560313

Cluster

View cluster (62 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 33-139

PDB

Domain cluster: rep: nucleocapsid_protein__YP_009177597__Phocine_morbillivirus__11240__D32-140

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00973.26 best	Paramyxo_ncap	83.2	2.60e-23	100.0%	25.8%

D2 medium residues 140-254

PDB

Domain cluster: rep: nucleocapsid_protein__YP_009512957__Feline_morbillivirus__1170234__D152-264

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00973.26 best	Paramyxo_ncap	109.2	3.30e-31	100.0%	28.5%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gttC01	1.10.3570.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain	0.69	60.0	5.07e-01	95.7%	86.6%
2k0nA00	1.10.246.20	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain	0.59	34.0	3.83e-01	82.6%	75.3%
2o7gA00	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.57	33.0	3.65e-01	81.7%	71.6%
2vugA04	1.20.58.2250	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.53	31.0	3.44e-01	74.8%	72.2%
1or7B01	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.52	32.0	3.51e-01	82.6%	74.5%
8sbeA02	1.20.1250.20	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains	0.52	40.0	3.44e-01	80.9%	96.8%
2l10A00	1.20.1420.10	Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain	0.51	38.0	3.50e-01	80.9%	82.9%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2996711	566.1.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap	0.94	90.0	5.90e-01	100.0%	28.5%
2521251	566.1.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap	0.93	89.0	5.89e-01	100.0%	29.4%
2769765	566.1.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap	0.91	87.0	5.76e-01	100.0%	29.1%
2756727	566.1.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap	0.88	84.0	5.57e-01	100.0%	29.2%
2749214	566.1.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap	0.84	79.0	5.27e-01	100.0%	29.6%
4495452	142.1.1.3 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2	0.62	34.0	3.54e-01	83.5%	56.4%
4991418	5065.1.1.3 ↗	alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2	0.58	44.0	3.44e-01	80.9%	78.1%
4350523	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.57	39.0	4.18e-01	77.4%	82.0%
3391667	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.56	45.0	3.63e-01	85.2%	87.1%
4617287	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.54	35.0	3.87e-01	73.9%	83.3%
3247448	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.53	43.0	3.50e-01	87.8%	84.8%
3991181	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.53	43.0	3.47e-01	89.6%	84.7%
4978032	5050.1.1.1 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr	0.52	42.0	3.62e-01	87.8%	97.3%
4018363	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.50	39.0	3.27e-01	81.7%	90.8%

D3 medium residues 255-403

PDB

Domain cluster: rep: nucleocapsid_protein__NP_054707__Mumps_orthorubulavirus__2560602__D281-403

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00973.26 best	Paramyxo_ncap	208.7	2.10e-61	99.3%	36.0%